View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_high_1 (Length: 882)
Name: NF17283_high_1
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 166 - 422
Target Start/End: Original strand, 14240197 - 14240453
Alignment:
| Q |
166 |
tgaatccattgcggtggcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttgnnnn |
265 |
Q |
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| T |
14240197 |
tgaatccattgcggtggcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttggaga |
14240296 |
T |
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| Q |
266 |
nnnnnnnnnnnctgttcggagagtggttgtggattttcagtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgttgt |
365 |
Q |
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| T |
14240297 |
gaagagagggattgttcggagagtggttgtggattttcggtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgtcgt |
14240396 |
T |
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| Q |
366 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttatttaagc |
422 |
Q |
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| T |
14240397 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttattgaagc |
14240453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 454 - 612
Target Start/End: Original strand, 14240485 - 14240643
Alignment:
| Q |
454 |
ccgctttgggaaagtgaaaacaagagcaaaccatcattttaggagcttaatgtgttgttgtcataatgatcctaatcttcaattaaaatcagttaaatta |
553 |
Q |
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| T |
14240485 |
ccgctttgggaaagtgaaaacaagagcaaaccatcattttaggagcttaatgtgtagttgtcataatgatcctaaacttcaattaaaatcagttaaatta |
14240584 |
T |
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| Q |
554 |
tcttcgatctttttagttattttaatccttgatattaagaatgataaaatgttcatgtg |
612 |
Q |
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| T |
14240585 |
tcttcaatctttttagttattttaatccttgacattaataatgataaaatgttgatgtg |
14240643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 166 - 416
Target Start/End: Complemental strand, 49946411 - 49946161
Alignment:
| Q |
166 |
tgaatccattgcggtggcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttgnnnn |
265 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946411 |
tgaatccattgtggtgtcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttggaga |
49946312 |
T |
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| Q |
266 |
nnnnnnnnnnnctgttcggagagtggttgtggattttcagtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgttgt |
365 |
Q |
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| T |
49946311 |
gaagagagggattgttcggagagtggttgtggattttcggtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgtcgt |
49946212 |
T |
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| Q |
366 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttat |
416 |
Q |
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| T |
49946211 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttat |
49946161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 166 - 422
Target Start/End: Complemental strand, 16729020 - 16728764
Alignment:
| Q |
166 |
tgaatccattgcggtggcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttgnnnn |
265 |
Q |
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| T |
16729020 |
tgaatccattgcggtgtcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggtttaggagggtttggaga |
16728921 |
T |
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| Q |
266 |
nnnnnnnnnnnctgttcggagagtggttgtggattttcagtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgttgt |
365 |
Q |
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| T |
16728920 |
gaagagagggatttttcggagagtggttgtggattttcagtgtggtgggtttcgcgtaggtcggagatttctgttataatgcgggagattgtttcgtcgt |
16728821 |
T |
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| Q |
366 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttatttaagc |
422 |
Q |
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| T |
16728820 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttattgaagc |
16728764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 746 - 855
Target Start/End: Complemental strand, 16728244 - 16728135
Alignment:
| Q |
746 |
ttcatgaatctttgatttttgttgcactagaggctttagctatattatttgtgagagtgattgtttgtaagtgcttgagttgtttgttgttgactgtgat |
845 |
Q |
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| T |
16728244 |
ttcatgagtttttgaatcttgttgcaccaaaggctatagctatattatttgtgagagtgattgcttggaaacaattgagttgtttgttgttgatcgtgac |
16728145 |
T |
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| Q |
846 |
gataccttgc |
855 |
Q |
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| T |
16728144 |
cataccttgc |
16728135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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