View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_high_3 (Length: 610)
Name: NF17283_high_3
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 203 - 610
Target Start/End: Original strand, 8227488 - 8227895
Alignment:
| Q |
203 |
tgtgaaacgtttctgttttgttttgagaagaaggattcaattgtttgattacatatttaagcatgtacatgtgagtaagcatgtacgatcaggtattgta |
302 |
Q |
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| T |
8227488 |
tgtgaaacgtttctgttttgttttgagaagaaggattcaattgtttgattacatatttaagcatgtacatgtgagtaagcatgtacgatcaggtattgta |
8227587 |
T |
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| Q |
303 |
taatttgtatcctaagttctaagaattgctctatagttagattcataaattctcaaacgagatggtagtttttgagaaaatcttccgttttgaatgtagg |
402 |
Q |
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| T |
8227588 |
taatttgtatcctaagttctaagaattgctctatagttagattcataaattctcaaacgagatggtagtttttgagaaaatcttccgttttgaatgtagg |
8227687 |
T |
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| Q |
403 |
tgatttatttggaatgtaggatattttaattaattaagaaagatttagttgatttgagaaataatggacttcaaaggtccatcccaaaatcaatttcttt |
502 |
Q |
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| T |
8227688 |
tgatttatttggaatgaaggatattttaattaattaagaaagatttagttggtttgagaaataatggacttcaaaggtccatcccaaaatcaatttcttt |
8227787 |
T |
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| Q |
503 |
cattcttcatttatacatgttatgggtgctcaagctgcatccctaaagagagttagatcctctccatttctgnnnnnnngaaaccgaaagatccattact |
602 |
Q |
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| T |
8227788 |
cattcttcatttatacatgttatgggtgctcaagctgcatcccgaaagagagttggatcctctccatttctgaaaaaaagaaactgaaagatccattact |
8227887 |
T |
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| Q |
603 |
atagtttt |
610 |
Q |
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| T |
8227888 |
atagtttt |
8227895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 8227294 - 8227452
Alignment:
| Q |
6 |
agattatacttcacaactacttctatgtaataataataattgagcacaagccatgttgggttgccaatgcttgaaaatgtggaagccattttgtcttgca |
105 |
Q |
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| T |
8227294 |
agattatacttcacaactacttctatgtaataataat---tgagcacaagccatgttgggttgccaatgcttgaaaatgtag------------------ |
8227372 |
T |
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| Q |
106 |
ttatatatgacttgagtattggaaaaacattactcttttaatcccttttctgtttaggtaaataagagtggcatttgtttatg |
188 |
Q |
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| T |
8227373 |
---tatatgacttgagtattggaaaaacattactcttttaatcccttttctgtttaggtaaataagagtggcatttgtttatg |
8227452 |
T |
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