View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17283_high_4 (Length: 601)
Name: NF17283_high_4
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 42354543 - 42353966
Alignment:
| Q |
11 |
caaaggctttttagtggatcttgtgtacattttggaaggtgaaaagagaaaggtcattgaacttaccaagatgaaaaagctagcttcaagttccaattct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42354543 |
caaaggctttttagtggatcttgtgtacattttggaaggtgaaaagagaaaggtcgttgaacttaccaagatgaaaaagctagcttcaagttccaattct |
42354444 |
T |
|
| Q |
111 |
ttatcaagtgaagctattgtccttaaacttgtaatgaaacacacattttgtaaaagttggtagaaactcttgttgcaccattttcnnnnnnngtagcaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42354443 |
ttatcaagtgaagctattgtccttaaacttgtaatgaaacacacattttgtaaaagttggtagaaactcttgttgcaccattttctttttttgtagcaaa |
42354344 |
T |
|
| Q |
211 |
agactataagagatatatgaattggtagaaggagaaaacaaacagaaaatggattgttgaagggtggtttagagggtggtgaccggcaaggacatagaaa |
310 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42354343 |
agactataagagatataagaattggtagaaggagaaaacaaacagaaaatggattgttgaagggtggttcagagggtggtgaccggcaaggacatagaaa |
42354244 |
T |
|
| Q |
311 |
gagagggtgcaataaatgagttaaaactgctacttatgaaaatggggtaagtgtagttggaagcattaaatgtcaaagttaatgcttgttcatgttttca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42354243 |
gagagggtgcaataaatgagttaaaactgctacttatgaaaatggggtaagtgtagttggaagcattaaatgtcaaagttaatgcttgttcatgttttca |
42354144 |
T |
|
| Q |
411 |
tgcctggattactgttacttaccacacaattttactttcatcaaaaaagaagaaaagagaggtgtgaatgacttttgtatattattatttacaaccaact |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42354143 |
tgcctggattactgttacttaccacacaattttactttcatcaaaaaagaagaaaagagaggtgtgaatgaattttgtatattattatttacaaccaact |
42354044 |
T |
|
| Q |
511 |
ttgatatgagaacaaatacaacctttacacacaaaaatatttgaatcctttatttttctggttggtttgtagttaatg |
588 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42354043 |
ttgatatgagaacaaatacaatctttacacacaaaaatatttgaatcctttatttttctggttggtttgtagttaatg |
42353966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University