View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_high_6 (Length: 483)
Name: NF17283_high_6
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 12997234 - 12997450
Alignment:
| Q |
15 |
aaaaatatccccatatcctactaaaatacaaagcaccgcaaagtaacatcatcaagataatattatgtcacataaagggtcaagtaaaacccacttgtac |
114 |
Q |
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| T |
12997234 |
aaaaatatccccatatcctactaaaatacaaagcaccgcaaagtaacatcatcaagataatattgtgtcacataaagggtcaagtaaaacccacttgtac |
12997333 |
T |
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| Q |
115 |
aaaatgacaacatgcaccatttctatgtcattatcatcttaactgccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattt |
214 |
Q |
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| T |
12997334 |
aaaatgacaacatgcaccatttctatgtcattatcatcttaactgccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattt |
12997433 |
T |
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| Q |
215 |
tttgtgtgaaagtgatg |
231 |
Q |
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||||||||||||||||| |
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| T |
12997434 |
tttgtgtgaaagtgatg |
12997450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 13071886 - 13072102
Alignment:
| Q |
15 |
aaaaatatccccatatcctactaaaatacaaagcaccgcaaagtaacatcatcaagataatattatgtcacataaagggtcaagtaaaacccacttgtac |
114 |
Q |
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| T |
13071886 |
aaaaatatccccatatcctactaaaatacaaagcaccgcaaagtaacatcatcaagataatattgtgtcacataaagggtcaagtaaaacccacttgtac |
13071985 |
T |
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| Q |
115 |
aaaatgacaacatgcaccatttctatgtcattatcatcttaactgccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattt |
214 |
Q |
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| T |
13071986 |
aaaatgacaacatgcaccatttctatgtcattatcatcttaactgccatgaaatctaaatgtttttggcttgaaaatattaaaaaatgatatcaccattt |
13072085 |
T |
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| Q |
215 |
tttgtgtgaaagtgatg |
231 |
Q |
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| T |
13072086 |
tttgtgtgaaagtgatg |
13072102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 317 - 473
Target Start/End: Original strand, 12997537 - 12997693
Alignment:
| Q |
317 |
ggaatcatcaccttgtccaaagagttcaagtaatcaactgccctttctctattcaccatgaaagtctcctcatccatctcaatgttaggagaacccctac |
416 |
Q |
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| T |
12997537 |
ggaatcatcaccttgtccaaagagttcaagtaatcaactgccctttctctattcaccatgaaagtctcctcatccatctcaatgttaggagaacccctac |
12997636 |
T |
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| Q |
417 |
aaattacaaaatttgcacaatattattatagcattaaatagtacataataacctatg |
473 |
Q |
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| T |
12997637 |
aaattacaaaatttgcacaatattattatagcattaaataatacataataacctatg |
12997693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 317 - 473
Target Start/End: Original strand, 13072177 - 13072333
Alignment:
| Q |
317 |
ggaatcatcaccttgtccaaagagttcaagtaatcaactgccctttctctattcaccatgaaagtctcctcatccatctcaatgttaggagaacccctac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072177 |
ggaatcatcaccttgtccaaagagttcaagtaatcaactgccctttctctattcaccatgaaagtctcctcatccatctcaatgttaggagaacccctac |
13072276 |
T |
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| Q |
417 |
aaattacaaaatttgcacaatattattatagcattaaatagtacataataacctatg |
473 |
Q |
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| T |
13072277 |
aaattacaaaatttgcacaatattattatagcattaaataatacataataacctatg |
13072333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 326 - 419
Target Start/End: Original strand, 28138753 - 28138846
Alignment:
| Q |
326 |
accttgtccaaagagttcaagtaatcaactgccctttctctattcaccatgaaagtctcctcatccatctcaatgttaggagaacccctacaaa |
419 |
Q |
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| T |
28138753 |
accttgtccaaagagttcaagtaatcaacagctctttccctattcaccatgaaactgtgctcgtccatctcgatgttaggggaaccccttcaaa |
28138846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 51937296 - 51937372
Alignment:
| Q |
338 |
gagttcaagtaatcaactgccctttctctattcaccatgaaagtctcctcatccatctcaatgttaggagaacccct |
414 |
Q |
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|||||||||||||||||||| |||||||| || || | |||||| | ||| ||||| ||||| || || |||||||| |
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| T |
51937296 |
gagttcaagtaatcaactgctctttctctgttgactaagaaagtatgctcgtccatttcaatattcggtgaacccct |
51937372 |
T |
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