View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_high_9 (Length: 339)
Name: NF17283_high_9
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 48205670 - 48205353
Alignment:
| Q |
1 |
caaagaatatgatctcctgtatgtttattaatttccagatagaaatctcttattctgctactttgaaggttgaatatttgaattactccaagttgatgga |
100 |
Q |
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| T |
48205670 |
caaagaatatgatctcctgtatgtttattaatttccagatacaaatctcttattctgctactttgaaggttgaatatttgaattactccaagttgatgga |
48205571 |
T |
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| Q |
101 |
gaagcatgttagtgataaggagaagccaatgattctattgcaaaaaagtgtgaagaagcttcactttgggagctgggaagagaaataagcagcagcgagc |
200 |
Q |
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| T |
48205570 |
gaagcatgttagtgataaggagaagccaatgattctattgcaaagaagtgtgaagaagcttcactttgggagctgggaagagaaacaagcagcagcgagc |
48205471 |
T |
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| Q |
201 |
aaaggatactgaaatgttggctaaagaagatgtcaaggtcggaaagttgatggttgaacctggggtgatgcccgctttggtgtcgatggctagcccgcgg |
300 |
Q |
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| T |
48205470 |
aaaggatactgaaatgttggctaaagaagatgtcaaggt--------------------atggggtgatgcccgctttggtgtcgatggctagcccgcgg |
48205391 |
T |
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| Q |
301 |
aaagtaggactgaaagctttgatccagctagctaatgg |
338 |
Q |
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| T |
48205390 |
aaagtaggactgaaagctttgatccagctagctaatgg |
48205353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 26982371 - 26982185
Alignment:
| Q |
65 |
gaaggttgaatat-ttgaattactccaagttgatggag-aagcatgttagtgataaggagaagccaatgattctattgcaaaaaa-gtgtgaagaagctt |
161 |
Q |
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| T |
26982371 |
gaaggttgaatatcttgaattagtccaaggtgatggaacaagcatagcagtcataaagaggtgccaatgattgtattgcaaagattgtgtgaagaagctt |
26982272 |
T |
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| Q |
162 |
cactttgggagctgggaagagaaataagcagcagcgagcaaaggatactgaaatgttggctaaagaagatgtcaaggtcggaaagttgatg |
252 |
Q |
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| T |
26982271 |
cactttgggagctgggaagagaaagaggaagc----agcaaaagatattgagatgctggctaaacaagatgttaaggtcagaaagttgatg |
26982185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 26999047 - 26999170
Alignment:
| Q |
65 |
gaaggttgaatat-ttgaattactccaagttgat-ggagaagcatgttagtgataaggagaagccaatgattctattgcaaaaaa-gtgtgaagaagctt |
161 |
Q |
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|||| |||||||| |||||||| |||||| |||| ||| |||||| ||| |||||||| |||| ||||| ||||||||| | |||||||||||||| |
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| T |
26999047 |
gaagattgaatatcttgaattagtccaaggtgataggacaagcatagcagtcataaggaggtgccagtgattgtattgcaaagattgtgtgaagaagctt |
26999146 |
T |
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| Q |
162 |
cactttgggagctgggaagagaaa |
185 |
Q |
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| T |
26999147 |
cactttgggagctgggaagagaaa |
26999170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 26984972 - 26985095
Alignment:
| Q |
65 |
gaaggttgaatat-ttgaattactccaagttgat-ggagaagcatgttagtgataaggagaagccaatgattctattgcaaaaaa-gtgtgaagaagctt |
161 |
Q |
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|||| |||||||| |||||||| |||||| |||| ||| |||||| ||| |||||||| |||| ||||| ||||||||| | |||||||||||||| |
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| T |
26984972 |
gaagattgaatatcttgaattagtccaaggtgataggacaagcatagcagtcataaggaggtgccagtgattgtattgcaaagattgtgtgaagaagctt |
26985071 |
T |
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| Q |
162 |
cactttgggagctgggaagagaaa |
185 |
Q |
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| T |
26985072 |
cactttgggagctgggaagtgaaa |
26985095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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