View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_low_15 (Length: 236)
Name: NF17283_low_15
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39620974 - 39621207
Alignment:
| Q |
1 |
caatgttgtttccataagcaagccttgaattgagcgaaaaggggtcttgagtattttgaaggaaaacgaagattcacagaatcaggagctggaatgctca |
100 |
Q |
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| T |
39620974 |
caatgttgtttccataagcaagccttgaattgagcgaaaaggggtcttgagtattttgaaggaaaacgaagattcacagaatcaggagctggaatgctca |
39621073 |
T |
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| Q |
101 |
attctacaataagagctttgtttctcctaaaacaaacaccacaggtgtcatttcacatcagcaaattttaaatgacnnnnnnngaaagagagacttatac |
200 |
Q |
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| T |
39621074 |
attctacaataagagctttgtttctcctaaaacaaacaccacaggtgtcatttcacatcagcaaattttaaatgacaaaaaaagaaagagagacttatac |
39621173 |
T |
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| Q |
201 |
ttattttccatcaaattgctttctttagtattat |
234 |
Q |
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| T |
39621174 |
ttattttccatcaaattgctttctttagtattat |
39621207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 39588230 - 39588278
Alignment:
| Q |
84 |
aggagctggaatgctcaattctacaataagagctttgtttctcctaaaa |
132 |
Q |
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| T |
39588230 |
aggagctggagtgctcaattcttgaataagagctttgtttctcctaaaa |
39588278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 39573734 - 39573775
Alignment:
| Q |
95 |
tgctcaattctacaataagagctttgtttctcctaaaacaaa |
136 |
Q |
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| T |
39573734 |
tgctcaaatcttcaataagagctttgtttctcctataacaaa |
39573775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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