View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_low_18 (Length: 201)
Name: NF17283_low_18
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 23937491 - 23937610
Alignment:
| Q |
18 |
attaaaagccaaccttacaaagttacatcatttttaacaattatgagagaattagacatggnnnnnnnntcaagagagtcatgaaatttattttatttag |
117 |
Q |
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| T |
23937491 |
attaaaagccaaccttacaaagttacatcatttgtaataactatgagagaattaaacatggaaaaaaatt---aagagtcatgaaatttattttattcag |
23937587 |
T |
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| Q |
118 |
tctcgaaattccattgttctagt |
140 |
Q |
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|||| ||||| |||||||||||| |
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| T |
23937588 |
tctcaaaatttcattgttctagt |
23937610 |
T |
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