View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_low_2 (Length: 697)
Name: NF17283_low_2
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 26530910 - 26531195
Alignment:
| Q |
19 |
actttggtacttaattttgaaaacgggcgtatcagtgnnnnnnngcctattctcacatgattcttgtgacattcagaatttgcatacagatgattaggca |
118 |
Q |
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| T |
26530910 |
actttggtacttaattttgaaaacaggtgtaacagtgtaaaaaagcctattctcacatgattc-----acattcagaatttgcatacagatgattaggca |
26531004 |
T |
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| Q |
119 |
tgatgaatttctcagcaacctctaaattcttaaccaattaccaaagaattctatttgaactactatttattgttcctgttttctgctcacaataacatcg |
218 |
Q |
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| T |
26531005 |
tgatgaatttctcaacaacctctaaattcttaaccaattaccaaagaattctatttgaactactatt----gttcctgttttctgctcacaataacatcg |
26531100 |
T |
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| Q |
219 |
tatctacttatgtttctgacagcaaacatgtttttcttatttgttctaataataatcaatttgatgttcgtcattttcgattaggacacccttct |
313 |
Q |
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| T |
26531101 |
tatctacttatgtttctgacagcaaacatgtttttcttatttgttctaataataatcaatttgatgttcgtcattttcgattaggacacccttct |
26531195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 342 - 469
Target Start/End: Original strand, 26531207 - 26531335
Alignment:
| Q |
342 |
tgtaatcagtttccaaatattttcattgataaaaaagttgatttgctatgtgtcatttggctaaacaagttggattactttttcaagttggtgatactta |
441 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26531207 |
tgtaatgagtttccatatattttcattgataaaaaagttgatttgctatgtgtcatttggctaaacaagttggattactttttcaagttggtgatactta |
26531306 |
T |
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| Q |
442 |
tacttctcatgcttttt-atttgattaaa |
469 |
Q |
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| T |
26531307 |
tacttctcatgctttttaatttgattaaa |
26531335 |
T |
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