View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_low_5 (Length: 593)
Name: NF17283_low_5
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 9485325 - 9485013
Alignment:
| Q |
9 |
gaaatgaactaatagtgcagtgcaacttgtaacaaaatggaatttta-ttacacggcaagagaaaattgttaaaaggaatcagattcaataagcatttca |
107 |
Q |
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| T |
9485325 |
gaaatgaactaatagtgcagtacaacttgtaacaaaatggaattttaattacacggcaggagaaaattttaaaaaggaatcagattcaataagcatttca |
9485226 |
T |
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| Q |
108 |
ttttcatct-agattcaattttaactttgtttcattaggaagtttagacattactaataattaatagattgaaccaaagattctatagttttgtcattca |
206 |
Q |
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| T |
9485225 |
ttttcatatgagattca-ttttaactttgttttcttaggaaaataatcaattaataata---------ttgaaccaaatattctgtagttttgtcattca |
9485136 |
T |
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| Q |
207 |
ttttaacggtgcattgtgcattaatctgatgctatggtatcccatttgggtaacagaaagggtgataaaatatgcatgttttggaatatgtactgcatag |
306 |
Q |
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| T |
9485135 |
ttttaacggtgcattgtgcattaatctgatgctatggtatcccatttgggtaacacaaagggtgataaaatatgcatgttttggaataagtactgcatgg |
9485036 |
T |
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| Q |
307 |
tttaattgcagtcttaaaaagtt |
329 |
Q |
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| T |
9485035 |
tttaattgcagtcttaaaaagtt |
9485013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 339 - 511
Target Start/End: Complemental strand, 9481907 - 9481738
Alignment:
| Q |
339 |
gtcactttttataaaaacccatttcaggtttccaaacgtattaactaagttaccaataagtttttaattatgttacatctttctctcaaacttataatag |
438 |
Q |
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| T |
9481907 |
gtcactttttataaaaacccatttcaggtttccaaatgtattaactaagttaccaataaatttttaaatatgttacatctttctctcaaacttataatag |
9481808 |
T |
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| Q |
439 |
atgaaaacaactacttcattagacaataa-ttatttaaagacaacatattagttacacgagtcacactaataga |
511 |
Q |
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| T |
9481807 |
atca----aactactacattagacaataatttatttaaagacaacatattagttacaaaagtcacactaataga |
9481738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 497 - 549
Target Start/End: Complemental strand, 9481714 - 9481662
Alignment:
| Q |
497 |
agtcacactaatagattattaaaataaggaaaatattttgtggatatcggtaa |
549 |
Q |
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| T |
9481714 |
agtcacactaatagattattaaaataaggaaaatattttgtggacattggtaa |
9481662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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