View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17283_low_9 (Length: 404)
Name: NF17283_low_9
Description: NF17283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17283_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 50465429 - 50465059
Alignment:
| Q |
19 |
ttagaagtaattatgattaaagttaaatgtgattaatgatttaatgggttaattaaccgtnnnnnnnnn-tctttacatataaattattgggtgaaaagc |
117 |
Q |
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| T |
50465429 |
ttagaagtaattaatattaaagttaaatgtgattaatgatttaacgggttaattaaccgtaaaaaaaaaatctttacatataaattattgggtgaaaagc |
50465330 |
T |
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| Q |
118 |
agaaatatcatatggtatctctccctctatccaaatgacgggttatttattgaatgtgacagggatatatagtatatgaggtaaaaacaataaaaagaag |
217 |
Q |
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| T |
50465329 |
agaaatatcatatggtatctctccctctatccaaatgacgggttatttattgaatgtgacagggatatatagtatatgaggtaaaaacaataaaaagaag |
50465230 |
T |
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| Q |
218 |
ttcttaataaatacagagcctagnnnnnnnagatctcaaaaccatccttttctaataaatagatacagtatgcgtgatgcaaccgttccctctttaaaaa |
317 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50465229 |
ttcctaataaatacagagcctagtttttttagatctcaaaaccatccttttctaataaatagatacagtatgcgtgatgcaaccgttccctctttaaaaa |
50465130 |
T |
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| Q |
318 |
catcacaagaattcaccttcttttcttcggttcatataagctactactagcaaaattttcttagtctctct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50465129 |
catcacaagaattcaccttcttttcttcggttcatataagctactactagcaaaattttcttagtctctct |
50465059 |
T |
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