View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17284_low_1 (Length: 587)

Name: NF17284_low_1
Description: NF17284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17284_low_1
NF17284_low_1
[»] chr7 (14 HSPs)
chr7 (13-583)||(25492400-25492989)
chr7 (186-581)||(25500970-25501366)
chr7 (189-305)||(25642393-25642509)
chr7 (27-123)||(25474062-25474158)
chr7 (27-123)||(25642204-25642300)
chr7 (70-138)||(25500834-25500902)
chr7 (30-119)||(25449753-25449842)
chr7 (15-123)||(25431393-25431501)
chr7 (189-305)||(25431184-25431300)
chr7 (213-305)||(25449963-25450055)
chr7 (199-305)||(25473844-25473950)
chr7 (199-284)||(25429197-25429282)
chr7 (366-417)||(25450102-25450155)
chr7 (365-395)||(25429355-25429385)
[»] chr5 (2 HSPs)
chr5 (184-305)||(495153-495274)
chr5 (15-88)||(495394-495467)
[»] chr2 (5 HSPs)
chr2 (30-118)||(35101344-35101432)
chr2 (27-88)||(35173936-35173997)
chr2 (45-88)||(35050634-35050677)
chr2 (66-123)||(35152807-35152864)
chr2 (30-118)||(35093039-35093127)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 583
Target Start/End: Original strand, 25492400 - 25492989
Alignment:
Q  13 aatatatttgggttatctatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagcccgacaaggtttgattatcaagaa 112  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25492400 aatatctttgggttatctatatctctcgaaaacactgccattttgtaaaaacaggagcacatatcacatttaaagcccggcaaggtttgattatcaagaa 25492499  T
Q  113 atgggggttgcacgcagtaaccaagactt------tctcaa-----agagat-------ctcttcctttacagattgtgnnnnnnnntgaaagaagcagt 194  Q
    ||||||||||||||||||| |||| |  |      | ||||     ||||||       ||||||||||||||||||||         ||||||||||||    
T  25492500 atgggggttgcacgcagtagccaataaattaaagctatcaataccgagagataagatatctcttcctttacagattgtgaaacaaaaagaaagaagcagt 25492599  T
Q  195 agcattgagcctaaaatccaacttccttacaattggcatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaactgatctcttta 294  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25492600 agcattgagcctaaaatccaacttccttacaattggtatgtttgtgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaactgatctcttta 25492699  T
Q  295 atcttggccttattccttaaagtccatgatgaag-nnnnnnnnnncaatatataattctccaatccctgagaggtaattatcttcttaaacatgatatga 393  Q
    |||||||||||||| |||||||||||||||||||           ||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25492700 atcttggccttattacttaaagtccatgatgaagaaataaaaaaacacaatataattctcctatccctgagaggtaattatcttcttaaacatgatatga 25492799  T
Q  394 caatattaattgaaaattatttaccaataccatcgttaattactgaccaacaacatggttaattaacgatgtatcactagcacattatcggtaagatgca 493  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  25492800 caatattaattgaaaattatttactaataccatcgttaattactgactaacaacatggttaattaacgatgtatcactggcacattatcggtaagctgca 25492899  T
Q  494 tctaacttggttaaccattttcaattaatatgttgcaacatttttcttgtataattaattgtttcaatttggtctctccctgtacttaca 583  Q
    |||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  25492900 tctaacttagttaaccatggccaattaatatgttgcaacatgtttcttgtataattaattgtttcagtttggcctctccatgtacttaca 25492989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 186 - 581
Target Start/End: Original strand, 25500970 - 25501366
Alignment:
Q  186 agaagcagtagcattgagcctaaaatccaacttccttacaattggcatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaactg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  25500970 agaagcagtagcattgagcctaaaatccaacttccttacaattggtatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagtaacta 25501069  T
Q  286 atctctttaatcttggccttattccttaaagtccatg----atgaagnnnnnnnnnncaatatataattctccaatccctgagaggtaattatcttctta 381  Q
    |||||||||||||||||||| || ||||||||||||     ||||||          |||||||  ||||||| | |||||||  |||||||||||||||    
T  25501070 atctctttaatcttggcctttttacttaaagtccatccataatgaagaaaaaaaacacaatata--attctcctagccctgag--gtaattatcttctta 25501165  T
Q  382 aacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgaccaacaacatggttaattaacgatgtatcactagcacattat 481  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||    
T  25501166 aacatgatatgacaatattatatgaaaattatttaccaataccatcgttaattactgactaacaacatggttaattaacgatgtatcactgatccattat 25501265  T
Q  482 cggtaagatgcatctaac-ttggttaaccattttcaattaatatgttgcaacatttttcttgtataattaattgtttcaatttggtctctccctgtactt 580  Q
     ||||  ||||||||||| || ||||||||| | | ||||||||||||  |||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  25501266 tggtattatgcatctaactttagttaaccatgtccgattaatatgttgggacatgtttcttgtataattaactgtttcaatttggcctctccctgtactt 25501365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 25642393 - 25642509
Alignment:
Q  189 agcagtagcattgagcctaaaatccaacttccttacaattggcatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaactgatc 288  Q
    ||||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||| | |   |||||||||||||||||||||||    
T  25642393 agcagtagctttgagcctaaaatccaactcccttacaattggtttgtttctgatgaagatgaagccgagaaggatggagccaaggggaaagaaactgatc 25642492  T
Q  289 tctttaatcttggcctt 305  Q
    |||||||||||||||||    
T  25642493 tctttaatcttggcctt 25642509  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 25474158 - 25474062
Alignment:
Q  27 atctatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagcccgacaaggtttgattatcaagaaatgggggttgc 123  Q
    |||| |||||||||  ||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  25474158 atctttatctctcgggaacactgtcattttgtagaaacaggagtacaaatcacatttaaagcccgccaaggtttgattattaaggaatgggggttgc 25474062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 25642204 - 25642300
Alignment:
Q  27 atctatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagcccgacaaggtttgattatcaagaaatgggggttgc 123  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||| ||||    
T  25642204 atctatatctctcgggaacactgccattttgtgaaaacaggagcacaaatcacatttaaagctcgccaaggtttgattatcaaggaatggggattgc 25642300  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 25500834 - 25500902
Alignment:
Q  70 cacatatcacatttaaagcccgacaaggtttgattatcaagaaatgggggttgcacgcagtaaccaaga 138  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||| ||||||    
T  25500834 cacatatcacatttaaagcccggcaaggtttgattatcaaggaatgggggttgcatgccgtagccaaga 25500902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 25449753 - 25449842
Alignment:
Q  30 tatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagcccgacaaggtttgattatcaagaaatggggg 119  Q
    |||||||||||  |||||||||| |||||||||||| | ||| |||||||||||||||||    ||||||||||||||||| ||||||||    
T  25449753 tatatctctcgggaacactgtcactttgtaaaaacacgggcagatatcacatttaaagcctctgaaggtttgattatcaaggaatggggg 25449842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 25431501 - 25431393
Alignment:
Q  15 tatatttgggttatctatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagcccgacaaggtttgattatcaagaaat 114  Q
    ||||||||| | |||| |||||||||  ||||||| ||||| ||| |||| |||||||| ||||||||||||||  |  ||||||||||||| ||| |||    
T  25431501 tatatttggatgatctttatctctcgggaacactgccatttcgtagaaacgggagcacaaatcacatttaaagcatgcgaaggtttgattattaaggaat 25431402  T
Q  115 gggggttgc 123  Q
    |||||||||    
T  25431401 gggggttgc 25431393  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 25431300 - 25431184
Alignment:
Q  189 agcagtagcattgagcctaaaatccaacttccttacaattggcatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaactgatc 288  Q
    ||||||||  ||||||| ||||||||||||||||||||||||   ||||||||  ||||||||| ||||| | |   ||||||| |||| |||| || ||    
T  25431300 agcagtagatttgagccgaaaatccaacttccttacaattggttagtttctgacaaagatgaagccgagaaggatgcagccaagcggaaggaaattggtc 25431201  T
Q  289 tctttaatcttggcctt 305  Q
    ||| |||||||||||||    
T  25431200 tctctaatcttggcctt 25431184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 25449963 - 25450055
Alignment:
Q  213 caacttccttacaattggcatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaactgatctctttaatcttggcctt 305  Q
    |||| |||||||||||||   |||||| | |||||||||| |||||   |  ||||||||||||| |||||||||||||||||||||||||||    
T  25449963 caacatccttacaattggttagtttctaaagaagatgaagccgagaaagatgaagccaaggggaaggaaactgatctctttaatcttggcctt 25450055  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 25473950 - 25473844
Alignment:
Q  199 ttgagcctaaaatccaacttccttacaattggcatgtttctgatgaagatgaagtcgaga-tgaaacaagccaaggggaaagaaactgatctctttaatc 297  Q
    ||||| ||||||||||||||||||||||||||   |||||| | ||||||  | |||||| ||| | || ||||||| |||||||| |||||||||||||    
T  25473950 ttgagactaaaatccaacttccttacaattggttagtttctaacgaagattcaatcgagaatgatagaa-ccaagggaaaagaaaccgatctctttaatc 25473852  T
Q  298 ttggcctt 305  Q
    ||||||||    
T  25473851 ttggcctt 25473844  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 25429197 - 25429282
Alignment:
Q  199 ttgagcctaaaatccaacttccttacaattggcatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaact 284  Q
    |||||||||||||| ||| |||||||||||||   ||||||||||||||| ||||||||| |||  || | ||||| |||||||||    
T  25429197 ttgagcctaaaatctaacatccttacaattggttagtttctgatgaagataaagtcgagacgaaggaatctaagggcaaagaaact 25429282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 25450102 - 25450155
Alignment:
Q  366 ggtaattatcttcttaaacatgatatg--acaatattaattgaaaattatttac 417  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||| |||||||    
T  25450102 ggtaattatgttcttaaacatgatatgccacaatattaattgaaaactatttac 25450155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 395
Target Start/End: Original strand, 25429355 - 25429385
Alignment:
Q  365 aggtaattatcttcttaaacatgatatgaca 395  Q
    |||||||||||||||||||||||||||||||    
T  25429355 aggtaattatcttcttaaacatgatatgaca 25429385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 495274 - 495153
Alignment:
Q  184 aaagaagcagtagcattgagcctaaaatccaacttccttacaattggcatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaac 283  Q
    |||||||||| ||  |||||||||||||| | |||||||||||||||   |||||||||||||||||||| ||||   || |||||||||| |||||||     
T  495274 aaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgatgaagatgaagttgagaatgaagaagccaagggaaaagaaat 495175  T
Q  284 tgatctctttaatcttggcctt 305  Q
      ||||||||||||| ||||||    
T  495174 caatctctttaatctaggcctt 495153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 495467 - 495394
Alignment:
Q  15 tatatttgggttatctatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagc 88  Q
    ||||||||||| ||||||||||||||  ||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  495467 tatatttgggtaatctatatctctcgtgaacactgccattttgtgaaaacaggagcacagatcacgtttaaagc 495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 35101432 - 35101344
Alignment:
Q  30 tatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagcccgacaaggtttgattatcaagaaatgggg 118  Q
    |||||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||| | | ||||||| | || || ||||||||    
T  35101432 tatatctctcgagagcattgtcattttgtgaaaacaggagcacatatcacttttaaagcctgtccaggtttggtgataaaaaaatgggg 35101344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 35173997 - 35173936
Alignment:
Q  27 atctatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagc 88  Q
    |||||||||||| ||   ||||| |||||||||| |||||||||||||||||||||||||||    
T  35173997 atctatatctctagaccccactgccattttgtaacaacaggagcacatatcacatttaaagc 35173936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 35050677 - 35050634
Alignment:
Q  45 cactgtcattttgtaaaaacaggagcacatatcacatttaaagc 88  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||    
T  35050677 cactgccattttgtaacaacaggagcacaaatcacatttaaagc 35050634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 35152807 - 35152864
Alignment:
Q  66 ggagcacatatcacatttaaagcccgacaaggtttgattatcaagaaatgggggttgc 123  Q
    |||||||||||||||||||||||| |   ||||||||| || ||||||||||| ||||    
T  35152807 ggagcacatatcacatttaaagcctgcacaggtttgatcatgaagaaatggggattgc 35152864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 35093127 - 35093039
Alignment:
Q  30 tatatctctcgaaaacactgtcattttgtaaaaacaggagcacatatcacatttaaagcccgacaaggtttgattatcaagaaatgggg 118  Q
    |||||||||||| | || || || |||||  |||||||| |||||||||||||||||||| | | ||||||| | ||  ||||||||||    
T  35093127 tatatctctcgagaccattgccactttgttgaaacaggatcacatatcacatttaaagcctgcccaggtttggtgatagagaaatgggg 35093039  T

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