View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17284_low_2 (Length: 492)
Name: NF17284_low_2
Description: NF17284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17284_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 6359318 - 6359029
Alignment:
| Q |
18 |
attaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtagatagagagaattacaagga |
117 |
Q |
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| T |
6359318 |
attaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtaaatagagagaattacaagga |
6359219 |
T |
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| Q |
118 |
cgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatac |
217 |
Q |
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| T |
6359218 |
cgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatac |
6359119 |
T |
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| Q |
218 |
tcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaagaatatacagaaagggtaagacataaaaag |
307 |
Q |
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| T |
6359118 |
tcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaagaatatacagaaagggtaagacataaaaag |
6359029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 348 - 483
Target Start/End: Complemental strand, 6359020 - 6358885
Alignment:
| Q |
348 |
gcaggtacaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgct |
447 |
Q |
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| T |
6359020 |
gcaggtacaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgct |
6358921 |
T |
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| Q |
448 |
ttatctgttccttgtacctaactaacccatattctt |
483 |
Q |
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| T |
6358920 |
ttatctattccttgtacctaactaacccacattctt |
6358885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 160 - 483
Target Start/End: Original strand, 32857285 - 32857607
Alignment:
| Q |
160 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttcatcgacataaactgtaaatcaatttc |
259 |
Q |
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||||||||||||||||| |||||| ||||| |||||||| ||| ||||| |||||| |||||||| ||||||||| || |||||| | ||||||||||| |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttcatggatataaacagcaaatcaatttc |
32857384 |
T |
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| Q |
260 |
atttgtacatggatcaaagaatatacagaaagggtaagaca-taaaaagattggaatgcaaaagtaaaatagtttatgtgctaggaactgcaggtacaag |
358 |
Q |
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| T |
32857385 |
atttgtacacagatcaagg--tttccataaaagataagaaagaaaaaagatttaaatgcaaaagtaaaatagatcagggaatagcaattacagtaacaag |
32857482 |
T |
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| Q |
359 |
ttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgctttatctgttcc |
458 |
Q |
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|| ||||||||||||||||| |||| || | | |||||||| ||||||||||||| | | || |||||||| | |||| |||||||||||||| |||| |
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| T |
32857483 |
ttctagtcagaaatgttaaaggatactgccattggaagaaggcttagaagcttcttctaatagaaattttatttcagttgcaatttgctttatctcttcc |
32857582 |
T |
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| Q |
459 |
ttgtacctaactaacccatattctt |
483 |
Q |
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|||| |||||||||||| |||||| |
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| T |
32857583 |
ttgtctctaactaacccacattctt |
32857607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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