View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17284_low_3 (Length: 264)
Name: NF17284_low_3
Description: NF17284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17284_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 14589246 - 14589011
Alignment:
| Q |
10 |
aagaatatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14589246 |
aagaacatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt |
14589147 |
T |
|
| Q |
110 |
acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14589146 |
acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga |
14589047 |
T |
|
| Q |
210 |
atggtaacctagaaagctcaattccatgagctaact |
245 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |
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|
| T |
14589046 |
acggtaacctagaaagctcaattccatgagctaact |
14589011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 14622904 - 14622669
Alignment:
| Q |
10 |
aagaatatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt |
109 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
14622904 |
aagaacatgcccaagatgaagcatttcaatgactgaactgggaccacaatgagtcatacaaccactaattgattcatgagttaagatcttaaactggggt |
14622805 |
T |
|
| Q |
110 |
acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622804 |
gcccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga |
14622705 |
T |
|
| Q |
210 |
atggtaacctagaaagctcaattccatgagctaact |
245 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
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|
| T |
14622704 |
acggtaacctagaaagctcaattccatgagctaact |
14622669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 12846776 - 12846568
Alignment:
| Q |
35 |
tcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgc |
134 |
Q |
| |
|
|||| |||||||| || |||||||||| ||||||| || ||||||| |||||| | ||||||||||| ||||||| |||| ||||||||||||||||| | |
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|
| T |
12846776 |
tcaatgactgaacctgaaccacaatgactcatacaccccccaattgctccatgggataagatcttaagctggggtgcccatgttttccaaacaattccac |
12846677 |
T |
|
| Q |
135 |
gttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggtaacctagaaagctcaattcc |
234 |
Q |
| |
|
||||||| |||| || ||||| |||||||| || |||||| ||||| ||| || | ||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
12846676 |
gttctttggttcgatcttcgaatcctttaggtaactcaagtgtacccttttttaggtttttcaaagcccaaaagaaaggtaacctagaaagctcaattcc |
12846577 |
T |
|
| Q |
235 |
atgagctaa |
243 |
Q |
| |
|
||||||||| |
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|
| T |
12846576 |
atgagctaa |
12846568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 51369630 - 51369865
Alignment:
| Q |
10 |
aagaatatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt |
109 |
Q |
| |
|
||||| ||||||||||| |||||| |||| |||||||||| |||||| ||| ||||||| |||||||||||| ||||| |||||| || | ||||||| |
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|
| T |
51369630 |
aagaacatgcccaagatgaagcatctcaacgactgaacttccaccacagtgactcatacatccaccaattgatggatgagctaagattttgatctggggt |
51369729 |
T |
|
| Q |
110 |
acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga |
209 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||| |||||| |||||| ||||||| ||||||||||||| |
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|
| T |
51369730 |
acccaggttttccaaacaattccacgttcttttgttctttcctcgaatccttgaggtaattcagatacaccgtctttacgatctttcaaagcccaaaaga |
51369829 |
T |
|
| Q |
210 |
atggtaacctagaaagctcaattccatgagctaact |
245 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
51369830 |
aaggtaacccagaaagttcaattccatgagctaact |
51369865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 29954817 - 29954588
Alignment:
| Q |
16 |
atgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaa |
115 |
Q |
| |
|
|||||||| || |||| | |||| |||||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||||| || ||| |||| |
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|
| T |
29954817 |
atgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatcttaagttgaggtgcccat |
29954718 |
T |
|
| Q |
116 |
gttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggta |
215 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||| || |||||||| ||||||||| |||||||||||||| ||| |||||||||||||| || | |
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|
| T |
29954717 |
gttttccaaacgattccacattcttttgttctttcctcaaatcctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggca |
29954618 |
T |
|
| Q |
216 |
acctagaaagctcaattccatgagctaact |
245 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
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|
| T |
29954617 |
acctagaaagctcaattccatgcgctaact |
29954588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 11532130 - 11531901
Alignment:
| Q |
16 |
atgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaa |
115 |
Q |
| |
|
|||||||| || |||| | |||| |||||||| || |||||| ||| ||||||| ||||| ||||||||||| | ||||||||||| || ||| |||| |
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|
| T |
11532130 |
atgcccaaaatgaagcttctcaatgactgaacctgaaccacagtgactcatacatccaccgattgatccatgtgctaagatcttaagttgtggtgcccat |
11532031 |
T |
|
| Q |
116 |
gttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggta |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||| |||||||||||||| ||| |||||||||||||| || | |
|
|
| T |
11532030 |
gttttccaaacaattccacgttcttttgttctttcctcaaattctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggca |
11531931 |
T |
|
| Q |
216 |
acctagaaagctcaattccatgagctaact |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11531930 |
acctagaaagctcaattccatgagctaact |
11531901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 20492952 - 20492723
Alignment:
| Q |
16 |
atgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaa |
115 |
Q |
| |
|
|||||||| || |||| | |||| |||||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||| | ||| ||| |||| |
|
|
| T |
20492952 |
atgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatctttagctgtggtgcccat |
20492853 |
T |
|
| Q |
116 |
gttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggta |
215 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| || || |||| || ||||||||| ||| |||||||| | ||| |||||||||||||| |||| |
|
|
| T |
20492852 |
gttttccaaacgattccatattcttttgttctttcttcaaatccttcgggtaattcaagtgtaccttctttaaggtttttcaaagcccaaaagaaaggta |
20492753 |
T |
|
| Q |
216 |
acctagaaagctcaattccatgagctaact |
245 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
20492752 |
acctagattgctcaattccatgagctaact |
20492723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 1355245 - 1355052
Alignment:
| Q |
52 |
accacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcc |
151 |
Q |
| |
|
|||||||||| ||||||| |||||||||| |||||||| ||||||||||| ||| ||| |||| || ||||||||||||||||||||||| || |||||| |
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|
| T |
1355245 |
accacaatgactcatacatccaccaattgctccatgagctaagatcttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgtcctttcc |
1355146 |
T |
|
| Q |
152 |
tcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggtaacctagaaagctcaattccatgagctaact |
245 |
Q |
| |
|
||||| |||| ||| ||||||||| ||||||||| |||| || |||| ||||||||| | |||| ||||||||||||||||| ||| |||| |
|
|
| T |
1355145 |
tcgaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaagacaacccagaaagctcaattccataagccaact |
1355052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 1362131 - 1361938
Alignment:
| Q |
52 |
accacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcc |
151 |
Q |
| |
|
|||||| ||| ||||||| |||||||||| |||||||| |||||| |||| ||| ||| |||| || ||||||||||||||||||||||| ||||||||| |
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|
| T |
1362131 |
accacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcc |
1362032 |
T |
|
| Q |
152 |
tcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggtaacctagaaagctcaattccatgagctaact |
245 |
Q |
| |
|
|| || |||| ||| ||||||||| ||||||||| |||| || |||||||||||||| | |||| ||||||||||||||||||||| |||| |
|
|
| T |
1362031 |
tcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaact |
1361938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 1358041 - 1357984
Alignment:
| Q |
43 |
tgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatctta |
100 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| ||| |||||| |||||||||| |
|
|
| T |
1358041 |
tgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatctta |
1357984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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