View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17285_high_13 (Length: 368)
Name: NF17285_high_13
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 24366160 - 24366513
Alignment:
| Q |
1 |
aagacttttttataagcaatatcagctattaagaagttattagacactcacagatgttgaatgtgatgaggaggctggggtgtgggcataaagggttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24366160 |
aagacttttttataagcaatatcagctattaagaaggtattagacactcacagatgttgaatgtga---ggaggctggggtgtgggcataaagggttgga |
24366256 |
T |
|
| Q |
101 |
ggcatacgaatgcaaggtcgaacccgctccatgctaacatactaacctaaccaacaattatgactttcacaattcnnnnnnnnnnnnnnnnnnnnnnnnn |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
24366257 |
ggcatacgaatgtaaggtcgaacccgatccatgctaacatactaacccaaccaacaattatgactttcaccattcaaaaagtaaaaaataaaaataaaaa |
24366356 |
T |
|
| Q |
201 |
tagaacttagatacgagggtatgagcccaatgagtgataaacaagacacgggcatgactagattagataaataatctaatcatacaaaatgtattataca |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24366357 |
tagaacttagatacgagggtatgaacccaatgagtgataaacaagacacgggcaagactagattagataaataatctaatcatacaaaatgtattataca |
24366456 |
T |
|
| Q |
301 |
ttaaatagttacaagaataaatgacctcctgtaatttcactaccaaattctaatatt |
357 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24366457 |
ttaaatagttacaagaataaatgacttcctgtaatttcactaccaaattctaatatt |
24366513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University