View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17285_high_20 (Length: 252)

Name: NF17285_high_20
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17285_high_20
NF17285_high_20
[»] chr1 (2 HSPs)
chr1 (10-238)||(33217772-33217994)
chr1 (10-215)||(33225729-33225928)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 33217994 - 33217772
Alignment:
Q  10 aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcagaagctaaaaagaatcctaaacagtaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  33217994 aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcagaagctaaaaagaatcctaaaca---- 33217899  T
Q  110 cacacaacaacaagaatataagagaatataaatcatatcaaatagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttta 209  Q
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217898 --cacaacaacaagaatatgagagaatataaatcatatcaagtagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttta 33217801  T
Q  210 ttacatgacccaaattgttgtaccctttg 238  Q
    |||||||||||||||||||||||||||||    
T  33217800 ttacatgacccaaattgttgtaccctttg 33217772  T

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Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 33225928 - 33225729
Alignment:
Q  10 aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcagaagctaaaaagaatcctaaacagtaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  33225928 aaggaaccatattgtaagcttgacggcaacttttattagcatataaaacaatcttcttcttcttcttttgtcagaagctaaaaagaatcctaaaca---- 33225833  T
Q  110 cacacaacaacaagaatataagagaatataaatcatatcaaatagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttta 209  Q
      ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33225832 --cacaacaacaagaatatgagagaatataaatcatatcaagtagtatctgatgcaattggtctctaaacgtgacacacgctgcggtgatgtcgtgttca 33225735  T

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