View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_high_5 (Length: 484)
Name: NF17285_high_5
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 32 - 481
Target Start/End: Original strand, 17595278 - 17595727
Alignment:
| Q |
32 |
cagatgaagataaatgggatgcataccaattaacctatgtattagttggtgttattgcatgtgcaactgttactgaatttcttggtacacattcagttgt |
131 |
Q |
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| T |
17595278 |
cagatgaagataaatgggatgcataccaattaacctatgtattagttggtgttattgcatgtgcaactgttactgaatttcttggtacacattctgttgt |
17595377 |
T |
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| Q |
132 |
tggagcattgatttttgggttaattcttccacgtggaaagtttacagacatgttgattgaacaaacagaagatattgcatcaggttatttggcaccattg |
231 |
Q |
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| T |
17595378 |
tggagcattgatttttgggttaattcttccacgtggaaagtttacagacatgttgattgaacaaacagaagatattgcatcaggttatttggcaccattg |
17595477 |
T |
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| Q |
232 |
ttttttgcaagtataggtttgagaagtaattcctattttctttatttgtctcttagtcaaaatatgttgttggtttgtgttatcatgatcttgttgattt |
331 |
Q |
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| T |
17595478 |
ttttttgcaagtataggtttgagaagtaatacctattttctttatttgtctcttagtcaaaatatgttgttggtttgtgttatcatgatcttgttgattt |
17595577 |
T |
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| Q |
332 |
cttccaagattgtgagcactgtagttgctacaagtatatatggaatgtctcttagagatagtatggctcttggagtgctcatgaatactaaaggtgtctt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17595578 |
cttccaagattgtgagcactgtagttgctacaagtatatatggaatgtctcttagagatagtatggctcttggagtgctcatgaatacaaaaggtgtctt |
17595677 |
T |
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| Q |
432 |
gtcattgattatactaaacattggatgggttagaaaggtattattcattt |
481 |
Q |
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| T |
17595678 |
atcattgattgtactaaacattggatgggatagaaaggtattattcattt |
17595727 |
T |
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