View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17285_high_6 (Length: 464)

Name: NF17285_high_6
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17285_high_6
NF17285_high_6
[»] chr3 (4 HSPs)
chr3 (18-454)||(48710115-48710551)
chr3 (19-175)||(48698929-48699085)
chr3 (385-429)||(48706759-48706803)
chr3 (258-321)||(1810011-1810074)
[»] chr6 (2 HSPs)
chr6 (273-321)||(733165-733213)
chr6 (257-316)||(9027617-9027676)
[»] chr1 (3 HSPs)
chr1 (258-317)||(24502801-24502860)
chr1 (208-340)||(4868415-4868547)
chr1 (277-325)||(34278685-34278733)
[»] chr8 (2 HSPs)
chr8 (208-309)||(4560548-4560650)
chr8 (273-317)||(25869254-25869298)
[»] chr7 (1 HSPs)
chr7 (288-321)||(4001743-4001776)
[»] chr4 (2 HSPs)
chr4 (277-325)||(46201378-46201426)
chr4 (207-246)||(46860027-46860067)


Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 48710551 - 48710115
Alignment:
Q  18 agattttagtcaaaacatagatatggatgtcatgcaaattactaatccagaagtttcccctgtgaacaactgtgaaattaactcccaagcaacatgagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48710551 agattttagtcaaaacatagatatggatgtcatgcaaattactaatccagaagtttcccctgtgaacaactgtgaaattaactcccaagcaacatgagat 48710452  T
Q  118 catctataattgtaacatcaagctcctaattattgtattgattcaagattaattttatataacagttccgatagctcatcaagggtcagcttggattgac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48710451 catctataattgtaacatcaagctcctaattattgtattgattcaagattaattttatataacagttccgatagctcatcaagggtcagcttggattgac 48710352  T
Q  218 ttatttgaactatctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48710351 ttatttgaactatctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttc 48710252  T
Q  318 tataggctttcgaaaatagtttatagcttatatnnnnnnncagtttgattttattttatcnnnnnnnattcaggcttaagctatcattaaatacatgccc 417  Q
    ||||||||| |||||||||||||||||||||||       ||||||||||||||||| |        |||||||||||||||||||||||||||||||||    
T  48710251 tataggcttacgaaaatagtttatagcttatataaaaaaacagtttgattttattttttatttttttattcaggcttaagctatcattaaatacatgccc 48710152  T
Q  418 cactatatctctacagaactacacatttacatttcat 454  Q
    |||||||||||||||||||||||||||||||||||||    
T  48710151 cactatatctctacagaactacacatttacatttcat 48710115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 48699085 - 48698929
Alignment:
Q  19 gattttagtcaaaacatagatatggatgtcatgcaaattactaatccagaagtttcccctgtgaacaactgtgaaattaactcccaagcaacatgagatc 118  Q
    |||||||||| |||||  ||  |||||||  | |||||||||||||  |||||||||||||||||||||||||||||| ||  | ||||||| ||| |||    
T  48699085 gattttagtccaaacacggaattggatgttgtacaaattactaatcaggaagtttcccctgtgaacaactgtgaaattgacctctaagcaacttgatatc 48698986  T
Q  119 atctataattgtaacatcaagctcctaattattgtattgattcaagattaattttat 175  Q
    |||||  |||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  48698985 atctacgattgtaacatcaagctcctaataattgtattgattcaagattaatattat 48698929  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 48706803 - 48706759
Alignment:
Q  385 attcaggcttaagctatcattaaatacatgccccactatatctct 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48706803 attcaggcttaagctatcattaaatacatgccccactatatctct 48706759  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 1810074 - 1810011
Alignment:
Q  258 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctata 321  Q
    ||||||| |||||||||||| ||||||| ||||||| ||  ||||||||| || ||||||||||    
T  1810074 tttgagagagcttacggaaacaacttatgacatgtccatgagttgttttctgcttatttctata 1810011  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 733165 - 733213
Alignment:
Q  273 ggaaataacttattacatgtcaatatgttgttttcagcatatttctata 321  Q
    ||||||||||||| ||||||| | | |||||||||||||||||||||||    
T  733165 ggaaataacttatgacatgtccacaagttgttttcagcatatttctata 733213  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 9027676 - 9027617
Alignment:
Q  257 gtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatattt 316  Q
    |||||| | |||||| ||||||||||||| ||||||| ||| |||||||||||| |||||    
T  9027676 gtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattt 9027617  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 24502801 - 24502860
Alignment:
Q  258 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttc 317  Q
    ||||||| ||||||| |||| ||||||| |||||||||||  ||||||||||| ||||||    
T  24502801 tttgagagagcttacagaaacaacttatgacatgtcaataatttgttttcagcttatttc 24502860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 340
Target Start/End: Complemental strand, 4868547 - 4868415
Alignment:
Q  208 ttggattgacttatttgaact-atctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgtttt 306  Q
    ||||||||| ||||||||| | ||||||| ||||| |||| ||  |||  |||||||| || ||| | ||| ||||||| ||||||||||| ||||||||    
T  4868547 ttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttgtttt 4868449  T
Q  307 cagcatatttctataggctttcgaaaatagttta 340  Q
    || | |||||  ||| |||||  |||||||||||    
T  4868448 caacttatttacataagcttttcaaaatagttta 4868415  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 34278685 - 34278733
Alignment:
Q  277 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 325  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  34278685 ataacttatgacatgttcataggttgttttcagcttatttctataggct 34278733  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 4560650 - 4560548
Alignment:
Q  208 ttggattgacttatttgaact-atctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgtttt 306  Q
    |||||||||||||||||| || ||||||| |||||||||| ||  || | |||||  | | |||| ||||||||||||| |||||||| || | ||||||    
T  4560650 ttggattgacttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttatggaaataacttataacatgtcagtaagctgtttt 4560551  T
Q  307 cag 309  Q
    |||    
T  4560550 cag 4560548  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 25869254 - 25869298
Alignment:
Q  273 ggaaataacttattacatgtcaatatgttgttttcagcatatttc 317  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  25869254 ggaaataacttatgacatgtccataagttgttttcagcttatttc 25869298  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 4001776 - 4001743
Alignment:
Q  288 catgtcaatatgttgttttcagcatatttctata 321  Q
    |||||||||| |||||||||||||||||||||||    
T  4001776 catgtcaataagttgttttcagcatatttctata 4001743  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 46201426 - 46201378
Alignment:
Q  277 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 325  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  46201426 ataacttatgacatgttcataggttgttttcagcttatttctataggct 46201378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 46860067 - 46860027
Alignment:
Q  207 cttggattgacttatttgaac-tatctattaacataagcac 246  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  46860067 cttggattgacttatttgaacttatctattcacataagcac 46860027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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