View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17285_high_9 (Length: 399)

Name: NF17285_high_9
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17285_high_9
NF17285_high_9
[»] chr4 (48 HSPs)
chr4 (100-382)||(39903312-39903594)
chr4 (12-85)||(48091095-48091168)
chr4 (12-86)||(199011-199085)
chr4 (12-86)||(199226-199300)
chr4 (12-86)||(20075537-20075611)
chr4 (12-86)||(25370392-25370466)
chr4 (12-86)||(32902465-32902539)
chr4 (12-86)||(52597502-52597576)
chr4 (12-86)||(55816450-55816524)
chr4 (12-86)||(2713843-2713917)
chr4 (12-86)||(12639977-12640051)
chr4 (12-86)||(36945223-36945297)
chr4 (12-86)||(55815837-55815911)
chr4 (15-86)||(388765-388836)
chr4 (15-86)||(40345133-40345204)
chr4 (15-86)||(48782077-48782148)
chr4 (12-86)||(389405-389479)
chr4 (12-86)||(25369795-25369869)
chr4 (12-86)||(28223575-28223649)
chr4 (12-86)||(31876800-31876874)
chr4 (12-86)||(32291027-32291101)
chr4 (12-86)||(36111217-36111290)
chr4 (12-86)||(40847689-40847763)
chr4 (13-86)||(26423771-26423844)
chr4 (12-85)||(29809087-29809160)
chr4 (12-81)||(36944627-36944696)
chr4 (13-86)||(48090478-48090551)
chr4 (15-86)||(12640589-12640660)
chr4 (12-86)||(20422731-20422805)
chr4 (12-86)||(26424404-26424478)
chr4 (12-86)||(37567474-37567548)
chr4 (12-86)||(52597711-52597785)
chr4 (13-86)||(33569732-33569805)
chr4 (12-86)||(35427258-35427331)
chr4 (12-86)||(40848130-40848204)
chr4 (25-86)||(20422143-20422204)
chr4 (12-82)||(6862663-6862733)
chr4 (15-81)||(31842726-31842791)
chr4 (12-86)||(32901863-32901937)
chr4 (12-85)||(40344516-40344589)
chr4 (13-82)||(47328397-47328466)
chr4 (12-64)||(3708807-3708859)
chr4 (12-55)||(20076186-20076229)
chr4 (12-54)||(48781526-48781568)
chr4 (15-80)||(31877435-31877500)
chr4 (25-85)||(47321772-47321832)
chr4 (50-85)||(35428238-35428273)
chr4 (49-86)||(52869459-52869496)
[»] chr8 (38 HSPs)
chr8 (12-86)||(16889207-16889281)
chr8 (12-86)||(7818486-7818560)
chr8 (12-86)||(11998468-11998542)
chr8 (12-86)||(33114188-33114262)
chr8 (12-86)||(43591019-43591093)
chr8 (12-86)||(11999080-11999154)
chr8 (12-86)||(35237271-35237345)
chr8 (12-85)||(39852167-39852240)
chr8 (12-80)||(38778172-38778240)
chr8 (12-86)||(7819097-7819171)
chr8 (12-86)||(33113587-33113661)
chr8 (12-86)||(40907611-40907684)
chr8 (12-86)||(43480628-43480702)
chr8 (15-80)||(43481284-43481349)
chr8 (12-80)||(40309500-40309568)
chr8 (12-79)||(16889828-16889895)
chr8 (12-79)||(30115386-30115453)
chr8 (12-86)||(4373698-4373772)
chr8 (12-86)||(10806437-10806511)
chr8 (12-86)||(16880518-16880592)
chr8 (12-86)||(30115996-30116070)
chr8 (12-86)||(36848197-36848271)
chr8 (12-86)||(43591616-43591690)
chr8 (12-86)||(44061997-44062071)
chr8 (12-86)||(16879900-16879974)
chr8 (13-86)||(35237865-35237937)
chr8 (26-82)||(44062610-44062666)
chr8 (15-86)||(38778798-38778869)
chr8 (12-60)||(4374301-4374349)
chr8 (15-85)||(4374995-4375065)
chr8 (12-68)||(2209036-2209092)
chr8 (12-59)||(10805987-10806034)
chr8 (19-86)||(38572234-38572301)
chr8 (12-86)||(39852803-39852877)
chr8 (19-86)||(10198237-10198304)
chr8 (49-86)||(41761811-41761848)
chr8 (49-86)||(41762515-41762552)
chr8 (49-86)||(43434701-43434738)
[»] chr7 (30 HSPs)
chr7 (12-86)||(34853403-34853477)
chr7 (12-82)||(4894515-4894585)
chr7 (12-86)||(36682847-36682921)
chr7 (12-86)||(46814417-46814491)
chr7 (15-86)||(36683467-36683538)
chr7 (12-86)||(24044043-24044117)
chr7 (12-86)||(47814635-47814709)
chr7 (12-84)||(47813985-47814057)
chr7 (15-86)||(22276079-22276150)
chr7 (15-86)||(42456519-42456590)
chr7 (12-86)||(4895082-4895156)
chr7 (12-86)||(19816276-19816350)
chr7 (12-86)||(22275437-22275510)
chr7 (12-86)||(27855578-27855651)
chr7 (15-85)||(19816895-19816965)
chr7 (12-86)||(30711800-30711874)
chr7 (12-86)||(34853996-34854070)
chr7 (12-86)||(42455933-42456007)
chr7 (12-86)||(24323982-24324055)
chr7 (12-86)||(46732579-46732653)
chr7 (12-82)||(46815062-46815132)
chr7 (15-85)||(36620131-36620201)
chr7 (12-60)||(32499287-32499335)
chr7 (12-68)||(32499872-32499928)
chr7 (12-86)||(33805981-33806055)
chr7 (12-56)||(18520899-18520943)
chr7 (48-86)||(27856166-27856204)
chr7 (49-86)||(33686938-33686974)
chr7 (15-52)||(36620743-36620780)
chr7 (12-68)||(27599241-27599297)
[»] chr3 (43 HSPs)
chr3 (12-86)||(29342353-29342427)
chr3 (12-86)||(3944907-3944981)
chr3 (12-86)||(37373977-37374051)
chr3 (12-86)||(23584883-23584957)
chr3 (12-86)||(23599706-23599780)
chr3 (12-85)||(31014924-31014997)
chr3 (12-86)||(25025186-25025260)
chr3 (12-86)||(25025764-25025838)
chr3 (12-86)||(32672178-32672252)
chr3 (12-86)||(44868618-44868692)
chr3 (12-86)||(50687708-50687782)
chr3 (12-86)||(55281847-55281921)
chr3 (12-80)||(19555288-19555356)
chr3 (15-86)||(50675128-50675199)
chr3 (12-86)||(8427743-8427817)
chr3 (12-86)||(23584249-23584323)
chr3 (12-86)||(23599072-23599146)
chr3 (12-86)||(31014349-31014423)
chr3 (12-82)||(44868023-44868093)
chr3 (12-78)||(47737673-47737739)
chr3 (12-86)||(48218603-48218677)
chr3 (12-86)||(48219235-48219309)
chr3 (15-86)||(37374609-37374680)
chr3 (12-86)||(42356245-42356322)
chr3 (12-75)||(55282421-55282484)
chr3 (12-86)||(37375468-37375542)
chr3 (25-86)||(41459142-41459202)
chr3 (12-86)||(24220591-24220665)
chr3 (12-86)||(37374832-37374901)
chr3 (12-85)||(41875616-41875689)
chr3 (12-60)||(43658895-43658943)
chr3 (12-86)||(19555923-19556000)
chr3 (12-85)||(47737077-47737149)
chr3 (15-68)||(49752913-49752966)
chr3 (12-60)||(29342993-29343041)
chr3 (12-60)||(38575059-38575107)
chr3 (12-59)||(49752312-49752359)
chr3 (15-86)||(50674641-50674707)
chr3 (12-60)||(38575642-38575690)
chr3 (12-52)||(40887941-40887981)
chr3 (12-68)||(43103929-43103985)
chr3 (20-86)||(43658267-43658332)
chr3 (49-86)||(38279421-38279458)
[»] chr1 (32 HSPs)
chr1 (12-84)||(42839548-42839620)
chr1 (12-86)||(52859788-52859862)
chr1 (12-86)||(1403052-1403126)
chr1 (12-86)||(27797129-27797203)
chr1 (12-86)||(43368835-43368909)
chr1 (15-86)||(42840316-42840387)
chr1 (12-82)||(1403688-1403757)
chr1 (12-86)||(8560743-8560816)
chr1 (14-86)||(27817006-27817078)
chr1 (12-79)||(49533762-49533829)
chr1 (12-86)||(6288204-6288278)
chr1 (12-86)||(7219648-7219721)
chr1 (12-86)||(8560168-8560242)
chr1 (12-86)||(42838949-42839023)
chr1 (12-86)||(42839713-42839787)
chr1 (12-86)||(48843592-48843666)
chr1 (12-86)||(49534396-49534470)
chr1 (12-85)||(43368203-43368276)
chr1 (12-85)||(51248483-51248556)
chr1 (12-86)||(27797736-27797810)
chr1 (12-86)||(7782691-7782765)
chr1 (12-60)||(48843962-48844010)
chr1 (12-86)||(11032181-11032255)
chr1 (12-85)||(41563192-41563265)
chr1 (12-73)||(48369507-48369568)
chr1 (12-47)||(6287671-6287706)
chr1 (12-58)||(7219048-7219094)
chr1 (49-83)||(29148955-29148989)
chr1 (12-54)||(37725423-37725465)
chr1 (12-53)||(41563792-41563833)
chr1 (12-60)||(27934295-27934342)
chr1 (12-60)||(51247866-51247914)
[»] chr5 (24 HSPs)
chr5 (12-86)||(3957512-3957586)
chr5 (15-86)||(4929509-4929580)
chr5 (12-86)||(26687512-26687586)
chr5 (12-86)||(26957243-26957317)
chr5 (12-85)||(8813683-8813756)
chr5 (12-79)||(42408011-42408078)
chr5 (12-86)||(4928883-4928957)
chr5 (12-86)||(5324403-5324477)
chr5 (12-86)||(28075969-28076043)
chr5 (12-86)||(33430055-33430128)
chr5 (12-85)||(21770007-21770084)
chr5 (12-75)||(3739663-3739726)
chr5 (15-86)||(3958137-3958208)
chr5 (12-60)||(42408565-42408613)
chr5 (12-59)||(13738099-13738146)
chr5 (40-85)||(8813090-8813135)
chr5 (49-86)||(25075034-25075071)
chr5 (49-86)||(25133003-25133040)
chr5 (12-60)||(3739038-3739086)
chr5 (34-86)||(5324316-5324368)
chr5 (19-86)||(25074295-25074362)
chr5 (19-86)||(25132264-25132331)
chr5 (51-88)||(21612142-21612179)
chr5 (49-86)||(39149468-39149505)
[»] chr2 (37 HSPs)
chr2 (12-86)||(4386960-4387034)
chr2 (12-86)||(9224278-9224352)
chr2 (12-86)||(28224388-28224462)
chr2 (12-85)||(39477325-39477398)
chr2 (15-86)||(6849300-6849371)
chr2 (12-86)||(7583793-7583867)
chr2 (12-86)||(7716683-7716757)
chr2 (12-86)||(10883299-10883373)
chr2 (12-86)||(16571130-16571204)
chr2 (12-86)||(16887595-16887669)
chr2 (12-86)||(20244171-20244245)
chr2 (12-86)||(28223800-28223874)
chr2 (15-86)||(6849545-6849616)
chr2 (12-86)||(3595258-3595332)
chr2 (12-86)||(11256128-11256202)
chr2 (12-86)||(7717285-7717358)
chr2 (12-86)||(8113300-8113374)
chr2 (12-86)||(16571726-16571800)
chr2 (12-84)||(30161947-30162019)
chr2 (15-86)||(16903092-16903163)
chr2 (12-79)||(39476534-39476601)
chr2 (15-82)||(40166846-40166913)
chr2 (12-82)||(7583148-7583218)
chr2 (12-86)||(11256740-11256814)
chr2 (12-68)||(20243583-20243639)
chr2 (15-86)||(8963516-8963587)
chr2 (12-86)||(40165885-40165959)
chr2 (25-86)||(8112692-8112753)
chr2 (12-64)||(467139-467191)
chr2 (12-83)||(467341-467412)
chr2 (31-86)||(4386367-4386422)
chr2 (12-86)||(3595895-3595969)
chr2 (12-86)||(33847885-33847959)
chr2 (48-86)||(12206800-12206838)
chr2 (48-86)||(33848497-33848535)
chr2 (50-86)||(18949921-18949957)
chr2 (12-68)||(37545706-37545762)
[»] scaffold0229 (1 HSPs)
scaffold0229 (12-86)||(15233-15307)
[»] scaffold0007 (1 HSPs)
scaffold0007 (12-86)||(11278-11351)
[»] chr6 (15 HSPs)
chr6 (12-86)||(5523846-5523920)
chr6 (12-86)||(6032170-6032244)
chr6 (12-86)||(33668233-33668307)
chr6 (12-86)||(5523212-5523286)
chr6 (12-86)||(30610723-30610797)
chr6 (12-85)||(13944303-13944376)
chr6 (12-86)||(12809081-12809155)
chr6 (12-86)||(12809702-12809776)
chr6 (12-86)||(13936640-13936714)
chr6 (12-86)||(30611345-30611419)
chr6 (12-85)||(31723846-31723919)
chr6 (12-85)||(6032753-6032826)
chr6 (15-82)||(33668833-33668900)
chr6 (45-88)||(11119589-11119632)
chr6 (12-86)||(33648163-33648237)
[»] scaffold1095 (1 HSPs)
scaffold1095 (12-86)||(1497-1571)
[»] scaffold0368 (1 HSPs)
scaffold0368 (12-86)||(11784-11858)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 100 - 382
Target Start/End: Complemental strand, 39903594 - 39903312
Alignment:
Q  100 caattcaacattgttggcttggcagtgtggttaagagagaagaggagacaaaatgctgagatagatttgggtatgcactcaagctagggagaggttactg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39903594 caattcaacattgttggcttggcagtgtggttaagagagaagaggagacaaaatgcagagatagatttgggtatgcactcaagctagggagaggttactg 39903495  T
Q  200 ttaaaagaggtgtcatatcttggatttgttgttttatgtatgtttcgggcattttgtaaggtaagagtccgacacaaaggtgaggagcatgctcttatga 299  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39903494 ttaaaagaggtgtcatatcttagatttgttgttttatgtatgttttgggcattttgtaaggtaagagtccgacacaaaggtgaggagcatgctcttatga 39903395  T
Q  300 ttgtccaaaatttgagcactatgttccctcaattttcctattttacctaatgacccatccctcttctcattccaccttatgtt 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39903394 ttgtccaaaatttgagcactatgttccctcaattttcctattttacctaatgacccatccctcttctcattccaccttatgtt 39903312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 48091095 - 48091168
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48091095 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccat 48091168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 199085 - 199011
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  199085 aagaatatgttcttcacttaatctaatcattgaatttaactttcccatggtgggaaaggattaacctttcccatg 199011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 199226 - 199300
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  199226 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 199300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 20075611 - 20075537
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  20075611 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 20075537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 25370392 - 25370466
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  25370392 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 25370466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 32902465 - 32902539
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  32902465 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaatattaacctttctcatg 32902539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 52597576 - 52597502
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  52597576 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtgggaaaagattaacctttcccatg 52597502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 55816450 - 55816524
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  55816450 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 55816524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 2713843 - 2713917
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  2713843 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatg 2713917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 12640051 - 12639977
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  12640051 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatg 12639977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 36945223 - 36945297
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  36945223 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatg 36945297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 55815911 - 55815837
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  55815911 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtgggaaaggattaacctttcccatg 55815837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 388836 - 388765
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  388836 aatatgtttttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 388765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 40345133 - 40345204
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  40345133 aatatgttcttcacttaatctaatcattgaatctaactttcccattgtgggaaaagattaacctttcccatg 40345204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 48782077 - 48782148
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  48782077 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgcgaaatgattaacctttcccatg 48782148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 389405 - 389479
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||    
T  389405 aagaatatgttcttcacttaatctaatcactgaatccaacttttccatggtgggaaaggattaacctttcccatg 389479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 25369869 - 25369795
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||    
T  25369869 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtggaaaaggattaacctttcccatg 25369795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 28223649 - 28223575
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||    
T  28223649 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatagagggaaaagattaacctttcccatg 28223575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 31876874 - 31876800
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||    
T  31876874 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaacctttcccatg 31876800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 32291101 - 32291027
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||    
T  32291101 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatgattggaaatgattaacctttcccatg 32291027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 36111217 - 36111290
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  36111217 aagaatatgttcttcacttaatctaatcattgaatccaa-tttcccatggtgggaaaggattaacctttcccatg 36111290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 40847763 - 40847689
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||    
T  40847763 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatggtgggaaaggattaaccttttccatg 40847689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 26423844 - 26423771
Alignment:
Q  13 agaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||||| |||||||||||||||||||||| |||||||  |||||||||||| |||||||||||||||||    
T  26423844 agaatatgttcttcacttaatctaatcattgaatccaactttttcatggtgggaaaggattaacctttcccatg 26423771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 29809087 - 29809160
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||||    
T  29809087 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatgataagaaatgattaacctttcccat 29809160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 36944696 - 36944627
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttc 81  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  36944696 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaagattaacctttc 36944627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 48090551 - 48090478
Alignment:
Q  13 agaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  48090551 agaatatgttctacacttaatctaatcattgaatccaactttcccatggtgggaatggattaacctttcccatg 48090478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 12640589 - 12640660
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  12640589 aatatgttcttcgcttaatctaatcattgaatccaactttcccatggtgggaaaggattaagctttcccatg 12640660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 20422731 - 20422805
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||| |||||| ||||||||||    
T  20422731 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaagctttcccatg 20422805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 26424404 - 26424478
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||  | ||||||||||||||    
T  26424404 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaagaactaacctttcccatg 26424478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 37567474 - 37567548
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||    
T  37567474 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaagtattaacctttcccatg 37567548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 52597711 - 52597785
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| ||||||  ||| |||||||||||||||||    
T  52597711 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgaaaaaggattaacctttcccatg 52597785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 33569805 - 33569732
Alignment:
Q  13 agaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||| |||| ||||||||||||    
T  33569805 agaatatgttcttcacttaatctaattattgaatccaacttttccatggtgggaaaggattgacctttcccatg 33569732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 35427331 - 35427258
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||| || ||| |||||||||||||||||    
T  35427331 aagaatatgttcttcacttaatctaatcattgaatccaa-tttcccatggcggaaaaggattaacctttcccatg 35427258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 40848130 - 40848204
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||||| ||| |||| ||||||||||| |||||    
T  40848130 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatagtgagaaatgattaaccttttccatg 40848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 20422204 - 20422143
Alignment:
Q  25 tcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||    
T  20422204 tcacttaatctaatcattgaatctacctttcccatggtgggaaaggattaacctttcccatg 20422143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 6862733 - 6862663
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||| ||||| | |||||||| ||||||||    
T  6862733 aagaatatgttcttcacttaatctaatctttgaatccaactttcctatggtagaaaaagattgacctttcc 6862663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 31842726 - 31842791
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttc 81  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||    
T  31842726 aatatgttcttcacttaatctaatcattgaa-tccactttcccatggttggaaatgattaacctttc 31842791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 32901937 - 32901863
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||| ||| | | |||||||||    
T  32901937 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaaggataatcttttcccatg 32901863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 40344589 - 40344516
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||| ||| ||| |||||||| |||| || |||| |||||| |||||||||    
T  40344589 aagaatatgttcttcacttaatctaataatttaatccaactttctcatgatgagaaaggattaaactttcccat 40344516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 47328397 - 47328466
Alignment:
Q  13 agaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    ||||||||||| |||||||||||||| |||||||  |||||| |||| || ||||||||| |||||||||    
T  47328397 agaatatgttcttcacttaatctaattattgaatctaacttttccatagtaggaaaagatgaacctttcc 47328466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 3708859 - 3708807
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgg 64  Q
    |||| ||||||| | |||||||||||||||||||| |||||||||||||||||    
T  3708859 aagagtatgttctttacttaatctaatcattgaatccaactttcccatggtgg 3708807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 20076186 - 20076229
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttc 55  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  20076186 aagaatatgttcttcacttaatctaatcattgaatccaactttc 20076229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 48781568 - 48781526
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaacttt 54  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  48781568 aagaatatattcatcacttaatctaatcattgaatccaacttt 48781526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31877435 - 31877500
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaaccttt 80  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||| |||  ||| |||||| ||||    
T  31877435 aatatgttcttcacttaatctaatcattaaatccaactttcccatagtgaaaaaggattaaacttt 31877500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 47321832 - 47321772
Alignment:
Q  25 tcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||||||||| ||| ||||||| |||| |||  ||| ||||||||||||||||    
T  47321832 tcacttaatctaatcattaaatccaacttttccatagtgataaaggattaacctttcccat 47321772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 35428238 - 35428273
Alignment:
Q  50 actttcccatggtgggaaaagattaacctttcccat 85  Q
    ||||||||||||||||||| ||||||||||||||||    
T  35428238 actttcccatggtgggaaaggattaacctttcccat 35428273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 52869496 - 52869459
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  52869496 aactttcccatggtgggaaaggattcacctttcccatg 52869459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 16889281 - 16889207
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16889281 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatg 16889207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 7818560 - 7818486
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  7818560 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 7818486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11998542 - 11998468
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  11998542 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatg 11998468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 33114188 - 33114262
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33114188 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 33114262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 43591093 - 43591019
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43591093 aagaatatgttcttcatttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcccatg 43591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 11999080 - 11999154
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  11999080 aagaatatgttcttcacttcatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatg 11999154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 35237345 - 35237271
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  35237345 aagaatatgttattcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 35237271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 39852240 - 39852167
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  39852240 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatggtgggaaaggattaacctttcccat 39852167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 38778240 - 38778172
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaaccttt 80  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  38778240 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaaccttt 38778172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 7819097 - 7819171
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||    
T  7819097 aagaatatgttcttcacttaatctaatcattgaatctaactttcgcatggtgggaaaagattaatctttcccatg 7819171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 33113661 - 33113587
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  33113661 aagaatatattcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaatctttcccatg 33113587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 40907684 - 40907611
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  40907684 aagaatatgttcttcacttaatctaatcattgaat-caactttcccgtggtgggaaaggattaacctttcccatg 40907611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 43480702 - 43480628
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  43480702 aagaatatgttcttcacttaatctaatcatttaatccaactttcccatggtgtaaaaagattaacctttcccatg 43480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 43481284 - 43481349
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaaccttt 80  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  43481284 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttt 43481349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 40309500 - 40309568
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaaccttt 80  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  40309500 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgggaaatgattaaccttt 40309568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 16889828 - 16889895
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctt 79  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  16889828 aagaatatgttcttcacttaatctaataattgaatccaactttcccatggtgggaaatgattaacctt 16889895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 30115453 - 30115386
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctt 79  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  30115453 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctt 30115386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 4373772 - 4373698
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||| ||||||| |||||||||    
T  4373772 aagaatatgttcttcacttaatataatcattgaattcaactttcctatgatgggaaatgattaacatttcccatg 4373698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 10806437 - 10806511
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| | ||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  10806437 aagaatatgttctttacttaatttaatcattgaatcaaactttcccatggtaggaaaagattaacctttcccatg 10806511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 16880518 - 16880592
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  ||||||| |||||||||||| |||||| ||||||||||    
T  16880518 aagaatatgttcttcacttaatctaatcattgaatctaactttcacatggtgggaaaggattaatctttcccatg 16880592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 30115996 - 30116070
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| ||| | |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  30115996 aagaatatattctttacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatg 30116070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 36848197 - 36848271
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||| |||||| ||||||||||    
T  36848197 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaagctttcccatg 36848271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 43591616 - 43591690
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||| |  ||||||||||||||||||||  ||||||||||||||||    
T  43591616 aagaatatgttcttcacttaatctaatcattgactctaactttcccatggtgggaaataattaacctttcccatg 43591690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 44062071 - 44061997
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||  ||||||||||| ||||    
T  44062071 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggttggaaagtattaacctttctcatg 44061997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 16879974 - 16879900
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||| | ||||| ||||||| |||||||||    
T  16879974 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatgataggaaatgattaacttttcccatg 16879900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 35237865 - 35237937
Alignment:
Q  13 agaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||||| |||||||||||||| ||||||| ||||||| | ||||||||||| |||||||||||||||||    
T  35237865 agaatatgttcttcacttaatctaattattgaat-caacttttctatggtgggaaaggattaacctttcccatg 35237937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 44062610 - 44062666
Alignment:
Q  26 cacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  44062610 cacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcc 44062666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 38778798 - 38778869
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||| ||| |||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||| ||||    
T  38778798 aatatattcttcacttaatctaatcattgaatacaactttctcatggtgagaaatgattaacctttctcatg 38778869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 4374301 - 4374349
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  4374301 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatg 4374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 4374995 - 4375065
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    ||||||||| |||||||||| ||||||||||| |||||||| |||||||| ||| |||| | |||||||||    
T  4374995 aatatgttcttcacttaatccaatcattgaatccaactttctcatggtggaaaatgattcatctttcccat 4375065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 2209092 - 2209036
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaa 68  Q
    |||||||||||  ||||||||||||||||||||||  ||||||| ||||||||||||    
T  2209092 aagaatatgttattcacttaatctaatcattgaatcgaactttctcatggtgggaaa 2209036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 10806034 - 10805987
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccat 59  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  10806034 aagaatatgttcttcatttaatctaatcattgaatccaactttcccat 10805987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 38572301 - 38572234
Alignment:
Q  19 tgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||| ||| ||||||||||  || || | ||||||||||||||||||||||||| ||||||||||||    
T  38572301 tgttcttcaattaatctaatggtttaagttaactttcccatggtgggaaaagattgacctttcccatg 38572234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 39852803 - 39852877
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| ||| |||||||||||||| |||||||  ||||||   ||||||||||| |||||||||||| ||||    
T  39852803 aagaatatattcttcacttaatctaataattgaatctaacttttttatggtgggaaaggattaacctttctcatg 39852877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 10198304 - 10198237
Alignment:
Q  19 tgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||| ||| ||||||||||  || || | |||||||||||||||| |||||||| ||||||||||||    
T  10198304 tgttcttcaattaatctaatggtttaagttaactttcccatggtggaaaaagattgacctttcccatg 10198237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 41761848 - 41761811
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  41761848 aactgtcccatggtgggaaaggattaacctttcccatg 41761811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 41762515 - 41762552
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  41762515 aactgtcccatggtgggaaaagattaaactttcccatg 41762552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 43434701 - 43434738
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  43434701 aacttttccatggtgggaaaagattcacctttcccatg 43434738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 34853477 - 34853403
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34853477 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcccatg 34853403  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 4894585 - 4894515
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4894585 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcc 4894515  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 36682921 - 36682847
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  36682921 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatg 36682847  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 46814491 - 46814417
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  46814491 aagaatatgttcttcacttaatctaatcgttgaattcaactttcccatggtgggaaaggattaacctttcccatg 46814417  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 36683467 - 36683538
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  36683467 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 36683538  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 24044043 - 24044117
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  24044043 aagaatatgttcttcacttaatctaatcattgaataaaactttcccatggtgggaaaggattaacctttcccatg 24044117  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 47814635 - 47814709
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  47814635 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaagctttcccatg 47814709  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 47814057 - 47813985
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttccca 84  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  47814057 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttccca 47813985  T

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Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 22276079 - 22276150
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  22276079 aatatgttcttcatttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 22276150  T

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Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 42456519 - 42456590
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  42456519 aatatgttcttcacttaatgtaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 42456590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 4895082 - 4895156
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  4895082 aagaatatgttcttcacttaatctaataattgaatccaactttcccatggtggaaaatgattaacctttcccatg 4895156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 19816350 - 19816276
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||   ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  19816350 aagaatatgttttacacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 19816276  T

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Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 22275510 - 22275437
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  22275510 aagaatatgttcttcacttaatctaatcattgaat-caactttcccatggtgggaaatgattaaccttttccatg 22275437  T

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Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 27855651 - 27855578
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  27855651 aagaatatgttcttcacttaatctaatcattgaat-caactttctcatggtgggaaatgattaacctttcccatg 27855578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 19816895 - 19816965
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  19816895 aatatgttcttcacttaatctaatcatttaatccaactttcccatggtggaaaaggattaacctttcccat 19816965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 30711874 - 30711800
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||| |||||||||| |||||    
T  30711874 aagaatatgttcttcacttaatctaataattgaatccaacttttccatggtgggaaaaaattaaccttttccatg 30711800  T

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Target: chr7; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 34853996 - 34854070
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||| |  |||||||| ||||||||||| |||||||||||||||||    
T  34853996 aagaatatgttcttcacttaatctaatcattgactctaactttcctatggtgggaaaggattaacctttcccatg 34854070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 42456007 - 42455933
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||| |||||||||||| ||| |||||| |||||||||| |||||||||||||||||    
T  42456007 aagaatatgttcttcacttaatttaatcattgaatccaattttcccgtggtgggaaaggattaacctttcccatg 42455933  T

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Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 24323982 - 24324055
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||| ||||||| ||| |||||||| |||||||| |||||||||||||||||    
T  24323982 aagaatatgttcttcacttaatctaattattgaatccaa-tttcccatagtgggaaatgattaacctttcccatg 24324055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 46732653 - 46732579
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  |||||||||||||||||||||| ||||||| |||| ||||||||  ||||||||||||||||    
T  46732653 aagaatatgttattcacttaatctaatcattgaatccaacttttccatagtgggaaagaattaacctttcccatg 46732579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 46815062 - 46815132
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||  |||||| |||||    
T  46815062 aagaatatgttcttcatttaatctaatcattgaatccaactttcccatggtgggaaataattaacttttcc 46815132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 36620201 - 36620131
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    ||||||||  ||||||||| ||||||||||||||||||||| |||| | | ||||||||||||||||||||    
T  36620201 aatatgtttttcacttaatttaatcattgaattcaactttctcatgatagaaaaagattaacctttcccat 36620131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 32499335 - 32499287
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  32499335 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatg 32499287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 32499872 - 32499928
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaa 68  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||    
T  32499872 aagaatatgttcttcacttaatctaatcattgaatccaactttcccgttgtgggaaa 32499928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 33806055 - 33805981
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||| |||||||||||| ||||||| ||||||||| ||| ||||   ||||||||||    
T  33806055 aagaatatgttcttcacttaatttaatcattgaatccaacttttccatggtggaaaatgattggtctttcccatg 33805981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 18520943 - 18520899
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcc 56  Q
    |||||||||||| |||||||||||||||||||||| |||||||||    
T  18520943 aagaatatgttcttcacttaatctaatcattgaatccaactttcc 18520899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 27856166 - 27856204
Alignment:
Q  48 caactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  27856166 caacttttccatggtgggaaatgattaacctttcccatg 27856204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 33686974 - 33686938
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  33686974 aactttcccatggtgggaaaa-attaacctttcccatg 33686938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36620743 - 36620780
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaact 52  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  36620743 aatatgttcttcacttaatctaatcattgaatccaact 36620780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 27599297 - 27599241
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaa 68  Q
    |||||| ||||||| ||||||||||||  |  |||| ||||||||||||||||||||    
T  27599297 aagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaa 27599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 29342427 - 29342353
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29342427 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatg 29342353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 3944981 - 3944907
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  3944981 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 3944907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 37374051 - 37373977
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37374051 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatg 37373977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 23584883 - 23584957
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  23584883 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgggaaaggattaacctttcccatg 23584957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 23599706 - 23599780
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  23599706 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgggaaaggattaacctttcccatg 23599780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 31014924 - 31014997
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  31014924 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatgatgggaaaagattaacctttcccat 31014997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 25025260 - 25025186
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  25025260 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatgatgggaaaggattaacctttcccatg 25025186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 25025764 - 25025838
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| || |||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  25025764 aagaatatgttcttctcttaatctaatcattgaatcaaactttcccatggtgggaaaggattaacctttcccatg 25025838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 32672252 - 32672178
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||    
T  32672252 aagaatatgttcttcacttaatctaatcattaaatccaactttcccatgttgggaaaggattaacctttcccatg 32672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 44868618 - 44868692
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  || ||||||||||||||||| |||||||||||||||||    
T  44868618 aagaatatgttcttcacttaatctaatcattgaatcaaattttcccatggtgggaaaggattaacctttcccatg 44868692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 50687708 - 50687782
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||    
T  50687708 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatggtgggaaagaattaacctttcccatg 50687782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 55281921 - 55281847
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||    
T  55281921 aagaatatgttcttcacttaatctaatcattaaatccaattttcccatggtgggaaaggattaacctttcccatg 55281847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 19555356 - 19555288
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaaccttt 80  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  19555356 aagaatatgttcttcacttaatctaatcatttaatccaactttcccatgatgggaaaagattaaccttt 19555288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 50675128 - 50675199
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||    
T  50675128 aatatgttcttcacttaatctaatcattgaattcaactttcccattgtgaaaaaggattaacctttcccatg 50675199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 8427743 - 8427817
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||| |||  |||||||||||||||||||| |||||||||| ||||||    
T  8427743 aagaatatgttcttcacttaatctaatcattaaatctaactttcccatggtgggaaaggattaaccttccccatg 8427817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 23584323 - 23584249
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  ||||||||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||    
T  23584323 aagaatatgtttttcacttaatctaatcattgaatcgaactttcccatggtgggaaaggattaacctgtcccatg 23584249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 23599146 - 23599072
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  ||||||||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||    
T  23599146 aagaatatgtttttcacttaatctaatcattgaatcgaactttcccatggtgggaaaggattaacctgtcccatg 23599072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 31014423 - 31014349
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||||| ||||    
T  31014423 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaatctttctcatg 31014349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 44868093 - 44868023
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  44868093 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaatgattaacctttcc 44868023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 47737673 - 47737739
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacct 78  Q
    |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  47737673 aagaatatgttcttcacttaatctaatcattgaatccaacattcccatggtgggaaatgattaacct 47737739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 48218677 - 48218603
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||    
T  48218677 aagaatatgttattcacttaatctaatcattgaatccaacttttccatagtgggaaaagattaacctttctcatg 48218603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 48219235 - 48219309
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||  ||||||||||||||||    
T  48219235 aagaatatattcatcacttaatctaatcattgaatccaattttcccatggtgagaaagaattaacctttcccatg 48219309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 37374609 - 37374680
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||| ||||| |||||||||    
T  37374609 aatatgttcttcacttaatctaatcattgaatccaactttcctatgatgggaaaaggttaacatttcccatg 37374680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 42356322 - 42356245
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg---gtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||   |||||||| |||| ||||||||||||    
T  42356322 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggtgggaaaggattgacctttcccatg 42356245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 55282421 - 55282484
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaa 75  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  55282421 aagaatatgttcttcacttaatctaatcattaaatccaactttcccatggtgggaaaggattaa 55282484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 37375468 - 37375542
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||| |||||| ||||||||||||||||| |||| ||||||||  ||||||||||| |||||||||||||||||    
T  37375468 aagaagatgttcttcacttaatctaatcatcgaatccaactttcttatggtgggaaaggattaacctttcccatg 37375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 41459202 - 41459142
Alignment:
Q  25 tcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  41459202 tcacttaatctaatcattgaat-caactttctcatggtgggaaaggattaacctttcccatg 41459142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 24220665 - 24220591
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||| |||||||||| ||| ||| ||||||| |||||  ||||||||||||||||    
T  24220665 aagaatatgttcttcacttaatctgatcattgaatccaatttttccatggtaggaaagaattaacctttcccatg 24220591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 37374901 - 37374832
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||     |||||| |||||||||||||||||    
T  37374901 aagaatatgttcttcacttaatctaatcattgaatccaactttccc-----gggaaaggattaacctttcccatg 37374832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 41875616 - 41875689
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||||||   ||| ||||||| ||||||||    
T  41875616 aagaatatgttcttcacttaatctaatcattgaacccaactttcccatggtaaaaaatgattaacttttcccat 41875689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 43658895 - 43658943
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  43658895 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatg 43658943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 19555923 - 19556000
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaa---ttcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||   | | ||||||||||| ||||||| |||||||||||| ||||    
T  19555923 aagaatatgttcttcacttaatctaatcattgaatcctactactttcccatgatgggaaaggattaacctttctcatg 19556000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 47737149 - 47737077
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    ||||||||||||  |||||||||||||| |||||| |||||| |||| ||||||||| || |||||||||||||    
T  47737149 aagaatatgttctccacttaatctaatcgttgaatccaacttaccca-ggtgggaaaggaataacctttcccat 47737077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 49752913 - 49752966
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaa 68  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||    
T  49752913 aatatattcttcacttaatctaatcattgaatccaactttcccatggtaggaaa 49752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 29342993 - 29343041
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  29342993 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatg 29343041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 38575107 - 38575059
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  38575107 aagaatatgttcttcatttaatctaatcattgaatccaactttcccatg 38575059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 49752359 - 49752312
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccat 59  Q
    |||||||||||| |||||||||||||||||||||| | ||||||||||    
T  49752359 aagaatatgttcttcacttaatctaatcattgaatcctactttcccat 49752312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 50674707 - 50674641
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||  |||||||||||||     ||| |||||||||||||||||||||||||||||||||| ||||    
T  50674707 aatatgttctacacttaatctaat-----aatccaactttcccatggtgggaaaagattaacctttctcatg 50674641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 38575642 - 38575690
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| ||||||||| |||||||||||| ||||||| |||||    
T  38575642 aagaatatgttcttcacttaatttaatcattgaatccaacttttccatg 38575690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 40887941 - 40887981
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaact 52  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  40887941 aagaatatgttcttcacttaatctaatcattgaatacaact 40887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 43103985 - 43103929
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaa 68  Q
    |||||||||||  |||||||||| |||| |||||| ||||||||| |||||||||||    
T  43103985 aagaatatgttattcacttaatccaatcgttgaatccaactttcctatggtgggaaa 43103929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 43658332 - 43658267
Alignment:
Q  20 gttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||  |||| |||||||| || |||||    
T  43658332 gttcttcacttaatctaatcattgaa-tcaactttcccatagtaagaaaggattaaccgtttccatg 43658267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 38279458 - 38279421
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  38279458 aactttcccatggtgggaaaggattcacctttcccatg 38279421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 42839548 - 42839620
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttccca 84  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42839548 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttccca 42839620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 52859788 - 52859862
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  52859788 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggttggaaaggattaacctttcccatg 52859862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 1403126 - 1403052
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  1403126 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatg 1403052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 27797203 - 27797129
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  27797203 aagaatatgttcttcacttaatctaatcattgaattcaaccttcccatggtgggaaaggattaaccttttccatg 27797129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 43368835 - 43368909
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  43368835 aagaatatgttcttcacttaatctaatcattgaatacaactttcccatggtgggaaagaattaacctttcccatg 43368909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 42840316 - 42840387
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||    
T  42840316 aatatgttcttcacttaatctaatcattgaattcaactttcccatagtggaaaatgattaacctttcccatg 42840387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 1403688 - 1403757
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  1403688 aagaatatgttcttcacttaatctaatcattgaat-caactttcccatggtgggaaaggattaacctttcc 1403757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 8560743 - 8560816
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  8560743 aagaatatgttcttcacttaatctaatcattgaat-caacttttccatggtgggaaaggattaacctttcccatg 8560816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 27817006 - 27817078
Alignment:
Q  14 gaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||    
T  27817006 gaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaaccttacccatg 27817078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 49533829 - 49533762
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctt 79  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  49533829 aagaatatgttcttcacttaatctaatcattgaatccaactttcccgtggtgggaaaggattaacctt 49533762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 6288204 - 6288278
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||  |||||||| |||| |||||||||||||||||    
T  6288204 aagaatatgttcttcacttaatctaatcattgaatccaacttctccatggtgagaaaggattaacctttcccatg 6288278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 7219648 - 7219721
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  7219648 aagaatatgttcttcacttaatctaatcattgaatccaa-tttcccatgatgggaaaggattaacctttcccatg 7219721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 8560242 - 8560168
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||| |||||| |||| |||||||||||| ||| |||||||||||||||||    
T  8560242 aagaatatgttcttcacttaatctaatctttgaatccaacattcccatggtggaaaaggattaacctttcccatg 8560168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 42839023 - 42838949
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||| ||||||||||| |||||    
T  42839023 aagaatatgttcttcacttaatctaatcattgactctaactttcccatggtgggaaaggattaacctttaccatg 42838949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 42839787 - 42839713
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||| |||||||| |  |||||||||||||||||||| |||||||||||||||||    
T  42839787 aagaatatgttcttcacttaatctgatcattgactctaactttcccatggtgggaaaggattaacctttcccatg 42839713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 48843666 - 48843592
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  ||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  48843666 aagaatatgttattcacttaatataatcattgaatccaactttcctatggtgtgaaaagattaacctttcccatg 48843592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 49534396 - 49534470
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  | |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  49534396 aagaatatgtttttaacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatg 49534470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 43368276 - 43368203
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| ||||||||| ||||||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  43368276 aagaatatgttcttcacttaatttaatcattgaatctaacattcccatggtgggaaaggattaacctttcccat 43368203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 51248483 - 51248556
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||| |||||||  |||||| |||||||||||||| |||||||||||||||    
T  51248483 aagaatatgttcttcacttaatctaattattgaatcaaacttttccatggtgggaaaaaattaacctttcccat 51248556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 27797736 - 27797810
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||| |  ||||||||||| |||| ||| |||||||||||||||||    
T  27797736 aagaatatgttcttcacttaatctaatcattgactctaactttcccatagtggaaaaggattaacctttcccatg 27797810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 7782691 - 7782765
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||| ||| ||||||||||| ||||||||||||||| ||||| ||||  |||||||||||    
T  7782691 aagaatatgttcttcacttgatccaatcattgaatccaactttcccatggtaggaaaggattggcctttcccatg 7782765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 48843962 - 48844010
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  48843962 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatg 48844010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 11032181 - 11032255
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||| ||||||| ||||||||||||  |  |||||||||||||||||||||||||  |||  |||||||||||    
T  11032181 aagaatgtgttcattacttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcccatg 11032255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 41563265 - 41563192
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    ||||||| |||| ||| |||||||||| ||||||| ||||||||||||||| | |||  |||||| ||||||||    
T  41563265 aagaatacgttcttcatttaatctaataattgaatccaactttcccatggtagaaaagaattaacatttcccat 41563192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 48369568 - 48369507
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagatt 73  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| || |||| ||| ||||    
T  48369568 aagaatatgttcttcacttaatccaatcattgaatccaactttcctatagtggaaaatgatt 48369507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 6287706 - 6287671
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaatt 47  Q
    |||||||||||| |||||||||||||||||||||||    
T  6287706 aagaatatgttcttcacttaatctaatcattgaatt 6287671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 7219094 - 7219048
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttccca 58  Q
    |||||||| ||| ||| |||||||||||||||||| |||||||||||    
T  7219094 aagaatatattcttcatttaatctaatcattgaatccaactttccca 7219048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 29148989 - 29148955
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttccc 83  Q
    |||||||||||||||||||| ||||||||||||||    
T  29148989 aactttcccatggtgggaaaggattaacctttccc 29148955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 37725465 - 37725423
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaacttt 54  Q
    |||||||||||| |||||||||||||| ||||||| |||||||    
T  37725465 aagaatatgttcttcacttaatctaatgattgaatccaacttt 37725423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 41563792 - 41563833
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactt 53  Q
    |||||||||||| |||||||||||||| ||||||| ||||||    
T  41563792 aagaatatgttcttcacttaatctaataattgaatccaactt 41563833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 27934295 - 27934342
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| || |||||||||||||||| || |||||||||||||    
T  27934295 aagaatatgttcttctcttaatctaatcattg-atccaactttcccatg 27934342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 51247914 - 51247866
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||| ||| |||||||||||||||||||||| ||| ||| |||||    
T  51247914 aagaatatattcttcacttaatctaatcattgaatccaatttttccatg 51247866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 3957586 - 3957512
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  3957586 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 3957512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 4929509 - 4929580
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  4929509 aatatattcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatg 4929580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 26687586 - 26687512
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||| | ||| |||||||||||||||||    
T  26687586 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtagaaaaggattaacctttcccatg 26687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 26957317 - 26957243
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||||||| | ||| |||||||||||||||||    
T  26957317 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtagaaaaggattaacctttcccatg 26957243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 8813683 - 8813756
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  8813683 aagaatatgttctttacttaatctaatcattgaatccaactttcccatgatggaaaaggattaacctttcccat 8813756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 42408078 - 42408011
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctt 79  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  42408078 aagaatatgttcttcatttaatctaatcattgaatccaattttcccatagtgggaaaagattaacctt 42408011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 4928957 - 4928883
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||| ||| ||||||| | ||||||||||| ||||||| |||||||||    
T  4928957 aagaatatgttcttcacttaatctaatcattaaatccaacttttctatggtgggaaaggattaacttttcccatg 4928883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 5324403 - 5324477
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||||  ||||  ||||||||||||||||    
T  5324403 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatggtatgaaagaattaacctttcccatg 5324477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 28075969 - 28076043
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| ||  |||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||    
T  28075969 aagaatatatttttcacttaatctaatcattgaatccaactttcccatggtggaaaatgattaaccttttccatg 28076043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 33430128 - 33430055
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||| |||||    
T  33430128 aagaatatgttcttcacttaatctaatcattgaatccaacttt-ccatggtaggaaaggattaaccttttccatg 33430055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 21770084 - 21770007
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaat----tcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| ||||||||||||||||||||||     ||||||||||||||||| ||| ||||||||||||||||    
T  21770084 aagaatatgttcttcacttaatctaatcattgaatccaaccaactttcccatggtggaaaaggattaacctttcccat 21770007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 3739663 - 3739726
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaa 75  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||| || ||||| ||||||    
T  3739663 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatagtaggaaaggattaa 3739726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 3958137 - 3958208
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| |||||||||||||| |||||||  ||||||||  || ||||||| |||||||||||||||||    
T  3958137 aatatgttcttcacttaatctaattattgaatcaaactttccattgatgggaaaggattaacctttcccatg 3958208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 42408565 - 42408613
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  42408565 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatg 42408613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 13738146 - 13738099
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccat 59  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  13738146 aagaatatgttcttcacttaatccaatcattgaatccaactttcccat 13738099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 8813135 - 8813090
Alignment:
Q  40 attgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||    
T  8813135 attgaatccaactttcccatggtgggagaggattaacctttcccat 8813090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 25075034 - 25075071
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25075034 aactttcccatggtgggaaaggattaacctttcccatg 25075071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 25133003 - 25133040
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25133003 aactttcccatggtgggaaaggattaacctttcccatg 25133040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 3739086 - 3739038
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatg 60  Q
    |||||||| ||  |||||||||||||||||||||| |||||||||||||    
T  3739086 aagaatatatttttcacttaatctaatcattgaatccaactttcccatg 3739038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 5324368 - 5324316
Alignment:
Q  34 ctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||||||| ||||||||||||| | ||||| |||||| ||||||||||    
T  5324368 ctaatcattgaatccaactttcccatgataggaaaggattaagctttcccatg 5324316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 25074362 - 25074295
Alignment:
Q  19 tgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||| ||| ||||||||||  || |||| |||||||||||||||| |||||||||||| || |||||    
T  25074362 tgttcttcaattaatctaatggttaaatttaactttcccatggtggaaaaagattaaccatttccatg 25074295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 25132331 - 25132264
Alignment:
Q  19 tgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||| ||| ||||||||||  || |||| |||||||||||||||| |||||||||||| || |||||    
T  25132331 tgttcttcaattaatctaatggttaaatttaactttcccatggtggaaaaagattaaccatttccatg 25132264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 21612142 - 21612179
Alignment:
Q  51 ctttcccatggtgggaaaagattaacctttcccatggt 88  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  21612142 ctttcctatggtgggaaaagattcacctttcccatggt 21612179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 39149468 - 39149505
Alignment:
Q  49 aactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  39149468 aactttcccatggtgggaaaggattcacctttcccatg 39149505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 4386960 - 4387034
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  4386960 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 4387034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 9224352 - 9224278
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  9224352 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 9224278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 28224388 - 28224462
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28224388 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 28224462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 39477325 - 39477398
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  39477325 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccat 39477398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 6849371 - 6849300
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  6849371 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 6849300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 7583793 - 7583867
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  7583793 aagaatatgttcttcacttaagctaatcattgaatccaactttcccatagtgggaaaagattaacctttcccatg 7583867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 7716757 - 7716683
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  7716757 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacatttcccatg 7716683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 10883373 - 10883299
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  10883373 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 10883299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 16571204 - 16571130
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  16571204 aagaatatgtttttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatg 16571130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 16887669 - 16887595
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  16887669 aagaatatgttcttcacttaatctaatcattgaatccaactatcccatggtgggaaaggattaacctttcccatg 16887595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 20244171 - 20244245
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  20244171 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatg 20244245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 28223874 - 28223800
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  28223874 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgggaaaggattaacctttcccatg 28223800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 6849545 - 6849616
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  6849545 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatg 6849616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 3595332 - 3595258
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  3595332 aagaatatgttcttcactttatctaatcattgaatccaactttcccatggtgggaaagaattaacctttcccatg 3595258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11256202 - 11256128
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||    
T  11256202 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgagaaatgattaacctttcccatg 11256128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 7717285 - 7717358
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  7717285 aagaatatgttcttcacttaatataatcattgaat-caactttcccatggtgagaaaggattaacctttcccatg 7717358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 8113300 - 8113374
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||| |||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||    
T  8113300 aagaatatgttcttcacataatctaatcatcgaatccaactttcccatggtggaaaaggattaacctttcccatg 8113374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 16571726 - 16571800
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||| ||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  16571726 aagaatatgttcttcacttgatctaatcattgaatccaattttcccatgatgggaaaggattaacctttcccatg 16571800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 30162019 - 30161947
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttccca 84  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| |||||||    
T  30162019 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatgatgggaaaggattaacttttccca 30161947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 16903092 - 16903163
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||  |||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||    
T  16903092 aatatgttattcacttaatctaatcattgaatccaactttctcatggtggaaaaggattaacctttcccatg 16903163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 39476601 - 39476534
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctt 79  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  39476601 aagaatatattcttcacttaatctaatcattgaattaaactttcccatagtgggaaaggattaacctt 39476534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 40166846 - 40166913
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    ||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  40166846 aatatgttcttgacttaatctaatcattgaatccaattttcccatggtgggaaaggattaacctttcc 40166913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 7583218 - 7583148
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    |||||||||||| |||| ||||||||||||||||| ||| |||| |||||||||||| |||||||||||||    
T  7583218 aagaatatgttcttcacctaatctaatcattgaatccaattttctcatggtgggaaaggattaacctttcc 7583148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 11256740 - 11256814
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| ||| |||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||| |||||    
T  11256740 aagaatatattcttcacttaatctaatcattgaatccaactttctcatggtggaaaatgattaaccttttccatg 11256814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 20243639 - 20243583
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaa 68  Q
    |||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  20243639 aagaatatattcttcacttaatctaatcattgaatccaactttcccatggtgggaaa 20243583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 8963587 - 8963516
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||| | | ||| |||||||||||||||||    
T  8963587 aatatgtttttcacttaatctaatcattgaatccaactttcccatgatagaaaaggattaacctttcccatg 8963516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 40165959 - 40165885
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||| ||||   ||||||||||    
T  40165959 aagaatatgttcttcacttaatccaatcattgaatccaactttcccatggtggaaaatgattggtctttcccatg 40165885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 8112753 - 8112692
Alignment:
Q  25 tcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||| |||| ||||    
T  8112753 tcacttaatctaatcattgaatccaactttcccatggtgagaaaggattaacatttctcatg 8112692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 467191 - 467139
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgg 64  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  467191 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtgg 467139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 467341 - 467412
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttccc 83  Q
    |||||||||||| ||||||||| |||| |||||||||||||||  || ||||| ||| ||||||||||||||    
T  467341 aagaatatgttcttcacttaatttaattattgaattcaactttttcacggtggaaaatgattaacctttccc 467412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 4386422 - 4386367
Alignment:
Q  31 aatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||    
T  4386422 aatctaatcattgaatccaactttcctatggtgggaaagtattaacctttcccatg 4386367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 3595895 - 3595969
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  |||||||||||||||||||||| ||||||| ||||| ||  ||| ||||||| |||||||||    
T  3595895 aagaatatgtttttcacttaatctaatcattgaatccaacttttccatgatgaaaaaggattaacatttcccatg 3595969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 33847959 - 33847885
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||  |||||| || |||||||||||||| ||| ||||  |||||||||||    
T  33847959 aagaatatgttcttcacttaatctaattgttgaatccatctttcccatggtggaaaaggattggcctttcccatg 33847885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 12206838 - 12206800
Alignment:
Q  48 caactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  12206838 caactttctcatggtgggaaaggattaacctttcccatg 12206800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 33848497 - 33848535
Alignment:
Q  48 caactttcccatggtgggaaaagattaacctttcccatg 86  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  33848497 caactttcccatgatgggaaaagattgacctttcccatg 33848535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 18949957 - 18949921
Alignment:
Q  50 actttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||||| |||||||||||| |||||||||    
T  18949957 actttcccatggtgagaaaagattaacttttcccatg 18949921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 37545762 - 37545706
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaa 68  Q
    |||||| ||||||| ||||||||||||  |  |||| ||||||||||||||||||||    
T  37545762 aagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaa 37545706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 15233 - 15307
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  15233 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatg 15307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11351 - 11278
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  11351 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggt-ggaaaagattaacctttcccatg 11278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 5523846 - 5523920
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  5523846 aagaatatgttcttcacttaatctaatcattgaatcaaactttccaatggtgggaaaagattaacctttcccatg 5523920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 6032244 - 6032170
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  6032244 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtgggaaaggattaacctttcccatg 6032170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 33668307 - 33668233
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33668307 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatg 33668233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 5523286 - 5523212
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||    
T  5523286 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtggaaaaggattaacctttcccatg 5523212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 30610797 - 30610723
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||    
T  30610797 aagaatatgttcttcacttaatctaatcattgaatccaattttcccatggtggaaaatgattaacctttcccatg 30610723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 13944376 - 13944303
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  13944376 aagaatatgttcttcatttaatctaatcattgaattcaactttcccatgatgggaaatgattaatctttcccat 13944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 12809155 - 12809081
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||||||||||| || ||||||||| || |||||||| |||||||||||||||||    
T  12809155 aagaatatgttcttcacttaatctaatcattgcatccaactttcctatagtgggaaaggattaacctttcccatg 12809081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 12809702 - 12809776
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||   ||||||| |||||||||||||||||    
T  12809702 aagaatatgttcttcacttaatctaatcattgaatccaactttcccaccatgggaaaggattaacctttcccatg 12809776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 13936640 - 13936714
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| | |||||||||||||||||| |  |||||||||||||||||||| |||||||||||||||||    
T  13936640 aagaatatgttctttacttaatctaatcattgactctaactttcccatggtgggaaaggattaacctttcccatg 13936714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 30611345 - 30611419
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||    
T  30611345 aagaatatgttcttcagttaatctaatcattgaatccaactttcccatggtgggaaaggattaacatttctcatg 30611419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 31723919 - 31723846
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| |||||||||||||||||| ||| ||| ||||||||||| ||||| ||||||||||||||||    
T  31723919 aagaatatgttcttcacttaatctaatcattaaatccaaatttcccatggtaggaaaggattaacctttcccat 31723846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 6032753 - 6032826
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccat 85  Q
    |||||||||||| ||||||||||||||||||||||  ||||||| ||||||| ||||| |||||||||| ||||    
T  6032753 aagaatatgttcttcacttaatctaatcattgaatctaactttctcatggtgagaaaaaattaaccttttccat 6032826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 33668833 - 33668900
Alignment:
Q  15 aatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcc 82  Q
    ||||| ||| |||||||||||||||||||||| ||||||| | ||||||||||| ||||||| |||||    
T  33668833 aatatattcttcacttaatctaatcattgaatccaacttttctatggtgggaaatgattaacatttcc 33668900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 11119632 - 11119589
Alignment:
Q  45 attcaactttcccatggtgggaaaagattaacctttcccatggt 88  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||    
T  11119632 attcacctttcccatggtggaaaaagattaaactttcccatggt 11119589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 33648163 - 33648237
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||| ||| |||||||||  ||||||||||| ||| ||||| |||||| ||||  ||| ||||||||||||    
T  33648163 aagaatatattcttcacttaattcaatcattgaatccaattttcctatggtgtgaaagaattgacctttcccatg 33648237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 1571 - 1497
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||  |||||||||||||||||||||| ||||||| |||||||| |||| |||||| ||||||||||    
T  1571 aagaatatgttattcacttaatctaatcattgaatccaacttttccatggtgcgaaatgattaagctttcccatg 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 11784 - 11858
Alignment:
Q  12 aagaatatgttcatcacttaatctaatcattgaattcaactttcccatggtgggaaaagattaacctttcccatg 86  Q
    |||||||||||| ||||||||||| |||||||| |  |||||||||||||||||||| ||||||||||| |||||    
T  11784 aagaatatgttcttcacttaatctgatcattgactctaactttcccatggtgggaaaggattaacctttaccatg 11858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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