View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17285_low_1 (Length: 1056)
Name: NF17285_low_1
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 1021; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1021; E-Value: 0
Query Start/End: Original strand, 18 - 1046
Target Start/End: Original strand, 21714254 - 21715282
Alignment:
| Q |
18 |
attaaaatcccttaatcctagagatcttgtccttttactaaaataaggtagaaccaaagaatcatgaattgaaaaacactgcaactttgagagacaacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714254 |
attaaaatcccttaatcctagagatcttgtccttttactaaaataaggtagaaccaaagaatcatgaattgaaaaacactgcaactttgagagacaacca |
21714353 |
T |
|
| Q |
118 |
atatctacaacgatctcaggaatgatctcaagaacaaattgtacagtgttgcgtggcaaaacgtataatgcttctagttgtgaacatctcccaactgcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714354 |
atatctacaacgatctcaggaatgatctcaagaacaaattgtacagtgttgcgtggcaaaacgtataatgcttctagttgtgaacatctcccaactgcac |
21714453 |
T |
|
| Q |
218 |
cattataggtttgttgataaaaatgacatcttgacaaatctagtagcttcagtcttgtgaggctacctatttcgtatggaagttcattgaagtcacaatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21714454 |
cattataggtttgttgataaaaatgacatcttgacaaatctagtagcttcagtcttgtgaggctacctatttcgcatggaagttcattgaagtcacaatg |
21714553 |
T |
|
| Q |
318 |
tcgcaagtcaagaacctcgagccttgttaagcttgctatgaaagaaatgttacccaacttcaacccattcaagcgcagagttcgaacatttgtcaacatt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714554 |
tcgcaagtcaagaacctcgagccttgttaagcttgctataaaagaaatgttacccaacttcaacccattcaagcgcagagttcgaacatttgtcaacatt |
21714653 |
T |
|
| Q |
418 |
tggattgatggaggcaatgagaatagtacttcactattggaatcattggttagagaaaataccttgagcccttctattccttcaaatgttaaatttgata |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714654 |
tggattgatggaggcaatgagaatagtacttcactattggaatcattggttagagaaaataccttgagcccttctattccttcaaatgttaaatttgata |
21714753 |
T |
|
| Q |
518 |
aaacaaaggaactttgtgatatactggtatttatgtgtagcaacaacatttcaaggtttgcagcctgcaatgaaccaataattggaatttcattgtgcca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714754 |
aaacaaaggaactttgtgatatactggtatttatgtgtagcaacaacatttcaaggtttgcagcctgcaatgaaccaataattggaatttcattgtgcca |
21714853 |
T |
|
| Q |
618 |
ccatgatgataccgcaaaataattttgcatactatcgtcccctgccaaggtgttgagaggtttgtcaacatttagcaaaattttttgattccctgacctc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714854 |
ccatgatgataccgcaaaataattttgcatactatcgtcccctgccaaggtgttgagaggtttgtcaacatttagcaaaattttttgattccctgacctc |
21714953 |
T |
|
| Q |
718 |
tttgctatccatatggccacttcacgaaccaagtcatgcatcttcacgcattgcatgtctttagccggcatcagcaaacatgattctaaaagcttgttta |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714954 |
tttgctatccatatggccacttcacgaaccaagtcatgcatcttcacgcattgcatgtctttagccggcatcagcaaacatgattctaaaagcttgttta |
21715053 |
T |
|
| Q |
818 |
tgccgacttgaaccaaactccttgataacttcagtggagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgca |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21715054 |
tgccgacttgaaccaaactccttgataacttcagtggagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgca |
21715153 |
T |
|
| Q |
918 |
atcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcact |
1017 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21715154 |
atcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcact |
21715253 |
T |
|
| Q |
1018 |
ccttcatcgtgatcatcaaatgctgatga |
1046 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21715254 |
ccttcatcgtgatcatcaaatgctgatga |
21715282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 188 - 1034
Target Start/End: Complemental strand, 21705095 - 21704246
Alignment:
| Q |
188 |
cttctagttgtgaacatctcccaactgcaccattataggtttgttgataaaaatgacatcttgacaaatctagtagcttcagtcttgtgaggctacctat |
287 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||| ||||||| || | | | || || || ||| ||||||||||||||||| |||||||| | || || |
|
|
| T |
21705095 |
cttctagttgtgaacatctccttaatgctccattgtaggttttttcaaatatatcacttcctgataaatctagtagcttcagccttgtgagatttcccat |
21704996 |
T |
|
| Q |
288 |
ttcgtatggaagttcattgaagtcacaatgtcgcaagtcaagaacctcgagccttgttaagcttgctatgaaagaaatgttacccaacttcaacccattc |
387 |
Q |
| |
|
||| || |||||||||||||| | |||| |||||||| ||||||||| ||| ||||||| |||||| |||||||||| | | ||||||||||||||| |
|
|
| T |
21704995 |
ttcataaggaagttcattgaacttacaacgtcgcaagagaagaacctcaagcattgttaactttgctacaaaagaaatgtcatctaacttcaacccattc |
21704896 |
T |
|
| Q |
388 |
aagcgcagagttcgaacatttgtcaacatttggattgatggaggcaatgagaa---tagtacttcactattggaatcattggttagagaaaataccttga |
484 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| |||||||||||||||||| |||||| ||| || |||||||||||||| |||||| ||||||| |
|
|
| T |
21704895 |
aagcgcagagttcgaacatttgttaaaaattggactgatggaggcaatgagaagaatagtacatcatgataggaatcattggttaaagaaaaaaccttga |
21704796 |
T |
|
| Q |
485 |
gcccttctattccttcaaatgttaaatttgataaaacaaaggaactttgtgatatactggtatttatgtgtagcaacaacatttcaaggtttgcagcctg |
584 |
Q |
| |
|
| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
|
|
| T |
21704795 |
gtccatcaattccttcaaatgttaaatttgataatacaaaggaactttgtgatatactggtatttatgtgtagcaacaacatttgaacttttgcagcttg |
21704696 |
T |
|
| Q |
585 |
caatgaaccaataattggaatttcattgtgccaccatgatgataccgcaaaataattttgcatactatcgtcccctgccaaggtgttgagaggtttgtca |
684 |
Q |
| |
|
||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21704695 |
caatggaccaataattggattttcattttcccaccatgatgataccgcaaaataattttgtatactatcgtcccctgccaaggtgttgagaggtttgtca |
21704596 |
T |
|
| Q |
685 |
acatttagcaaaattttttgattccctgacctctttgctatccatatggccacttcacgaaccaagtcatgcatcttcacgcattgcatgtctttagccg |
784 |
Q |
| |
|
||||||| ||||||||| ||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||| ||| | |
|
|
| T |
21704595 |
acatttaccaaaattttgcgatcctctgacctctttgctatccataaggccacttcgcgaaccaagtcatgcatcttcacacattccatgtcttcagcag |
21704496 |
T |
|
| Q |
785 |
gcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtggagatcttcctcccacacctagtcctattgc |
884 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| |||| | ||||||| |||| ||||||||| |||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
21704495 |
gcatcagcaaacaagattctacaagtttgtctatggcaacttgaatcaaaatccttgatatcttcagtggatgtcttcctcccacacccagtccaattgc |
21704396 |
T |
|
| Q |
885 |
atataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatttatag |
984 |
Q |
| |
|
||||| ||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21704395 |
atatatgattaaatcttctattgatatgttgtaatcttctggaaacatagaacacatcaaaaagagcaactctgcttccttgttttgtaaatatgtatag |
21704296 |
T |
|
| Q |
985 |
cttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatc |
1034 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
21704295 |
cttagttcaagacaacttaaagcatctctcactccttcatcgtgatcatc |
21704246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 754 - 1046
Target Start/End: Complemental strand, 21623023 - 21622733
Alignment:
| Q |
754 |
tgcatcttcacgcattgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtg |
853 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21623023 |
tgcatcttcacacgttgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgtcttgaaccaaactccttgataacttcagtg |
21622924 |
T |
|
| Q |
854 |
gagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaa |
953 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21622923 |
gagatcttcctccaac--ctagtcctattgcatataggattaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaa |
21622826 |
T |
|
| Q |
954 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
1046 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21622825 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcgtcgtgatcatcaaatgccgatga |
21622733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 754 - 1046
Target Start/End: Complemental strand, 21644737 - 21644447
Alignment:
| Q |
754 |
tgcatcttcacgcattgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtg |
853 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21644737 |
tgcatcttcacacgttgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgtcttgaaccaaactccttgataacttcagtg |
21644638 |
T |
|
| Q |
854 |
gagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaa |
953 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21644637 |
gagatcttcctccaac--ctagtcctattgcatataggattaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaa |
21644540 |
T |
|
| Q |
954 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
1046 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21644539 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcgtcgtgatcatcaaatgccgatga |
21644447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 880 - 1046
Target Start/End: Complemental strand, 21596916 - 21596750
Alignment:
| Q |
880 |
attgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatt |
979 |
Q |
| |
|
|||| ||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21596916 |
attggatatatgattaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatt |
21596817 |
T |
|
| Q |
980 |
tatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
1046 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21596816 |
tatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgccgatga |
21596750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 295 - 528
Target Start/End: Complemental strand, 21123844 - 21123614
Alignment:
| Q |
295 |
ggaagttcattgaagtcacaatgtcgcaagtcaagaacctcgagccttgttaagcttgctatgaaagaaatgttacccaacttcaacccattcaagcgca |
394 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||||| || |||||||||||| | |||| |||||||| ||| || ||||| ||||| ||||||| |
|
|
| T |
21123844 |
ggaagttcattgaagttacaacgtctcaagtcaagaacctcaaggcttgttaagcttccaatgacagaaatgtcaccaaagttcaatccatttaagcgca |
21123745 |
T |
|
| Q |
395 |
gagttcgaacatttgtcaacatttggattgatggaggcaatgagaatagtacttcactattggaatcattggttagagaaaataccttgagcccttctat |
494 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| ||||| | | ||||| | | || ||||| ||||| ||||||||||| ||||||| ||| |
|
|
| T |
21123744 |
aagttcgaacatttttcaacagttggattgatggagaaaatgatattggtactactc---tgtaatcaacggttaaagaaaatacctcaagcccttgtat |
21123648 |
T |
|
| Q |
495 |
tccttcaaatgttaaatttgataaaacaaaggaa |
528 |
Q |
| |
|
||||||||||||||||| |||||| | |||||| |
|
|
| T |
21123647 |
tccttcaaatgttaaatgcgataaatccaaggaa |
21123614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 190 - 519
Target Start/End: Complemental strand, 21116522 - 21116196
Alignment:
| Q |
190 |
tctagttgtgaacatctcccaactgcaccattataggtttgttgataaaaatgacatcttgacaaatctagtagcttcagtcttgtgaggctacctattt |
289 |
Q |
| |
|
||||||||||||||| |||| | ||| ||||||||| | | | || ||| | ||||| |||||||||||| | ||| || ||| |||| | ||||||| |
|
|
| T |
21116522 |
tctagttgtgaacatttccctattgctccattatagctgtttcgagaaatacgacattctgacaaatctagcaacttaagacttatgagttttcctattt |
21116423 |
T |
|
| Q |
290 |
cgtatggaagttcattgaagtcacaatgtcgcaagtcaagaacctcgagccttgttaagcttgctatgaaagaaatgttacccaacttcaacccattcaa |
389 |
Q |
| |
|
|| |||||| ||||||||| |||| ||| ||||||||||||||| | |||||||||||| | ||||||||||||| | |||| ||||| ||||| || |
|
|
| T |
21116422 |
cgataggaagtccattgaagtgacaacgtctcaagtcaagaacctcaatgcttgttaagcttccgatgaaagaaatgtcatccaatttcaatccatttaa |
21116323 |
T |
|
| Q |
390 |
gcgcagagttcgaacatttgtcaacatttggattgatggaggcaatgagaatagtacttcactattggaatcattggttagagaaaataccttgagccct |
489 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||| ||||| | | ||||| | ||| |||| |||||| |||| ||||| |||||| |
|
|
| T |
21116322 |
gcgcaaagttcgaacatttgtcaacaactggatggatggagaaaatgatactggtact---attttgttatcaatggttattgaaagtacctcaagccct |
21116226 |
T |
|
| Q |
490 |
tctattccttcaaatgttaaatttgataaa |
519 |
Q |
| |
|
| || ||||||||||||||||| ||||||| |
|
|
| T |
21116225 |
tgtactccttcaaatgttaaatgtgataaa |
21116196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 21705235 - 21705135
Alignment:
| Q |
36 |
tagagatcttgtccttttactaaaataaggtagaaccaaagaatcatgaattgaaaaacactgcaactttgagagacaaccaatatctacaacgatctca |
135 |
Q |
| |
|
|||||||||||||| |||| |||||||| || ||| | | ||||||| ||||||||||||||||| ||||| ||| | ||| ||| ||||| |||||| |
|
|
| T |
21705235 |
tagagatcttgtccatttaataaaataacgtggaagctgaaaatcatgtattgaaaaacactgcaagtttgatagagcagcaacatccacaaccatctca |
21705136 |
T |
|
| Q |
136 |
g |
136 |
Q |
| |
|
| |
|
|
| T |
21705135 |
g |
21705135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 23009450 - 23009554
Alignment:
| Q |
312 |
acaatgtcgcaagtcaagaacctcgagccttgttaagcttgctatgaaagaaatgttacccaa---cttcaacccattcaagcgcagagttcgaacattt |
408 |
Q |
| |
|
||||||| ||| |||||||||||| || || ||||||||| ||| ||||||| ||||||| || ||| || ||||||||||| |||||||||| |||| |
|
|
| T |
23009450 |
acaatgttgcaggtcaagaacctcaagtctcgttaagcttcctaagaaagaagtgttacctaagttcttaaatccattcaagcgtagagttcgaagattt |
23009549 |
T |
|
| Q |
409 |
gtcaa |
413 |
Q |
| |
|
||||| |
|
|
| T |
23009550 |
gtcaa |
23009554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University