View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_12 (Length: 394)
Name: NF17285_low_12
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 21623098 - 21622733
Alignment:
| Q |
17 |
tcaacgtaaacaaactttggtctctcagcataggatccgaaaagatatatgaaagcattttatatatccatgtcttgcatcttcacacgttgcatgtctt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623098 |
tcaacgtaaacaaactttggtctctcagcataggatccgaaaagatatatgaaagtattttatatatccatgtcttgcatcttcacacgttgcatgtctt |
21622999 |
T |
|
| Q |
117 |
tagccggcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtggagatcttcctcccacacctagtcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21622998 |
tagccggcatcagcaaacatgattctaaaagcttgtttatgccgtcttgaaccaaactccttgataacttcagtggagatcttcctcc--aacctagtcc |
21622901 |
T |
|
| Q |
217 |
tattgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatat |
316 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21622900 |
tattgcatataggattaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatat |
21622801 |
T |
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| Q |
317 |
ttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
21622800 |
ttatagcttagttcaagacaactcaaagcatttctcactccttcgtcgtgatcatcaaatgccgatga |
21622733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 21644812 - 21644447
Alignment:
| Q |
17 |
tcaacgtaaacaaactttggtctctcagcataggatccgaaaagatatatgaaagcattttatatatccatgtcttgcatcttcacacgttgcatgtctt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644812 |
tcaacgtaaacaaactttggtctctcagcataggatccgaaaagatatatgaaagtattttatatatccatgtcttgcatcttcacacgttgcatgtctt |
21644713 |
T |
|
| Q |
117 |
tagccggcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtggagatcttcctcccacacctagtcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21644712 |
tagccggcatcagcaaacatgattctaaaagcttgtttatgccgtcttgaaccaaactccttgataacttcagtggagatcttcctcc--aacctagtcc |
21644615 |
T |
|
| Q |
217 |
tattgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatat |
316 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644614 |
tattgcatataggattaaatcatcggtcgatatgttgcaatcttctggaaatatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatat |
21644515 |
T |
|
| Q |
317 |
ttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
21644514 |
ttatagcttagttcaagacaactcaaagcatttctcactccttcgtcgtgatcatcaaatgccgatga |
21644447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 92 - 384
Target Start/End: Original strand, 21714990 - 21715282
Alignment:
| Q |
92 |
tgcatcttcacacgttgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtg |
191 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21714990 |
tgcatcttcacgcattgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtg |
21715089 |
T |
|
| Q |
192 |
gagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21715090 |
gagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaa |
21715189 |
T |
|
| Q |
292 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21715190 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
21715282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 92 - 372
Target Start/End: Complemental strand, 21704526 - 21704246
Alignment:
| Q |
92 |
tgcatcttcacacgttgcatgtctttagccggcatcagcaaacatgattctaaaagcttgtttatgccgacttgaaccaaactccttgataacttcagtg |
191 |
Q |
| |
|
||||||||||||| || |||||||| ||| |||||||||||||| ||||||| ||| |||| |||| | ||||||| |||| ||||||||| |||||||| |
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| T |
21704526 |
tgcatcttcacacattccatgtcttcagcaggcatcagcaaacaagattctacaagtttgtctatggcaacttgaatcaaaatccttgatatcttcagtg |
21704427 |
T |
|
| Q |
192 |
gagatcttcctcccacacctagtcctattgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaa |
291 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
21704426 |
gatgtcttcctcccacacccagtccaattgcatatatgattaaatcttctattgatatgttgtaatcttctggaaacatagaacacatcaaaaagagcaa |
21704327 |
T |
|
| Q |
292 |
ctctgcttccttgttttgtaaatatttatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatc |
372 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
21704326 |
ctctgcttccttgttttgtaaatatgtatagcttagttcaagacaacttaaagcatctctcactccttcatcgtgatcatc |
21704246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 218 - 384
Target Start/End: Complemental strand, 21596916 - 21596750
Alignment:
| Q |
218 |
attgcatataggattaaatcatcgattgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatt |
317 |
Q |
| |
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|||| ||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21596916 |
attggatatatgattaaatcgtcggtcgatatgttgcaatcttctggaaacatagaacacaacaaaaagagcaactctgcttccttgttttgtaaatatt |
21596817 |
T |
|
| Q |
318 |
tatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgctgatga |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21596816 |
tatagcttagttcaagacaactcaaagcatttctcactccttcatcgtgatcatcaaatgccgatga |
21596750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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