View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_16 (Length: 365)
Name: NF17285_low_16
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 26310013 - 26309680
Alignment:
| Q |
13 |
gagatgaacatgacgtcaatgtgaaccaagttggattcattgtatatgactaagtttattgtctcaattcttgaaacaataactttattcatttaggatg |
112 |
Q |
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| T |
26310013 |
gagaagaacatgacgtcaatgtgaaccaagttggattcactgtatatgactaagtttattatctcaattcttgaaacaataactccattcatttaggatg |
26309914 |
T |
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| Q |
113 |
gtggactcaatatattgcggagaaactaatggagtttaaaatatagttgatcatttggtgaatattgaggaagaggataagtctttacttttattgtgtc |
212 |
Q |
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| T |
26309913 |
gtggactcaatatattgcagagaaaccaatggagtttaaaatatagttgatcatttggtgaatattgaggaagaggataagtctttacttttattgtgtc |
26309814 |
T |
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| Q |
213 |
tgttacctatacccttcgagcacttcaatgataatatactttatggaaaagaaggcactatcactttagatgaggtctaatcagagaaccaatgaggtaa |
312 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26309813 |
tgttacctataccattcgagcacttcaatgataatatactttatggaaaagaaggcactatcactttagatgaggtctaatcggagaaccaatgaggtaa |
26309714 |
T |
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| Q |
313 |
ctacatttaatgacttgaaggttgaagattgtta |
346 |
Q |
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| T |
26309713 |
cgacatttaatgacttgaaggttgaagattgtta |
26309680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 32429328 - 32429288
Alignment:
| Q |
77 |
caattcttgaaacaataactttattcatttaggatggtgga |
117 |
Q |
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||||||||||||||| |||| || ||||||||||||||||| |
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| T |
32429328 |
caattcttgaaacaacaactctactcatttaggatggtgga |
32429288 |
T |
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