View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_17 (Length: 313)
Name: NF17285_low_17
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 51845449 - 51845725
Alignment:
| Q |
18 |
agatatcattccagttcatgttcctatctcaaaacataactcatcaaaacatagcagagcatcagaaagtagtggaaagaaggattctaggagaggttct |
117 |
Q |
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| T |
51845449 |
agatatcattccagttcatgttcctatctcaaaacatagctcatcaaaacatagcagagcatcagaaagtagtggaaagaaggattctaggagaggttct |
51845548 |
T |
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| Q |
118 |
tcgaagagtggtggaatgggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggtttacctgatttgatgaaagctgctgctgaggttttgggaa |
217 |
Q |
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| T |
51845549 |
tcgaagagtggtggaatgggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggtctacctgatttgatgaaagctgctgctgaggttttgggaa |
51845648 |
T |
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| Q |
218 |
atggtggattaggttctgcttataaagcagccatgactaatggtttatctgtggttgtgaagaggatgagggagatg |
294 |
Q |
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| T |
51845649 |
atggtggattaggttctgcttataaagcagccatgactaatggtttatctgtggttgtgaagaggatgagggagatg |
51845725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 7666074 - 7665932
Alignment:
| Q |
136 |
ggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggtttacctgatttgatgaaagctgctgctgaggttttgggaaatggtggattaggttctg |
235 |
Q |
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| T |
7666074 |
ggtgagcttgtgatgatgaataatgagaagggtgtgtttggtttacctgatttgatgaaagcttctgctgaagttcttggaaatggagggtttggatcat |
7665975 |
T |
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| Q |
236 |
cttataaagcagccatgactaatggtttatctgtggttgtgaa |
278 |
Q |
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| T |
7665974 |
cttataaagctgtgatggctaatggtgttgctgtggttgtgaa |
7665932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 18628566 - 18628453
Alignment:
| Q |
129 |
tggaatgggtgatcttgtaatggtgaatgatgaaaaaggtgtgtttggtttacctgatttgatgaaagctgctgctgaggttttgggaaatggtggatta |
228 |
Q |
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| T |
18628566 |
tggaataggtgatattgtgatggtgaatgatgagaagggttcatttggtttacaagatttgatgaaagctgcggcagaggttttggggaacggtggattg |
18628467 |
T |
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| Q |
229 |
ggttctgcttataa |
242 |
Q |
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| T |
18628466 |
ggatcggcttataa |
18628453 |
T |
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