View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_20 (Length: 292)
Name: NF17285_low_20
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 2190221 - 2190485
Alignment:
| Q |
19 |
gtttcatctggattcaccagcctacaagcctccaaccaaacatcctcattcttcggacattcttcacatcctttcttaatcaataacctcgcttccttaa |
118 |
Q |
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| T |
2190221 |
gtttcatctggattcaccagcctacaagcctccaaccaaacatcctcattcttcggacattcttcacatcctttcttaatcaataaccttgcttccttaa |
2190320 |
T |
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| Q |
119 |
ccttccccgccaactcctccagcctggcagccgcaatccatccacaagcatacttcggattcgttcgagtaacactctttaacaacaacatcgccttatt |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2190321 |
ccttccccgccaactcctccaacctggcagccgcaatccatccacaagcatacttcggattcgttcgagtaacactctttaacaacaacctcgccttatt |
2190420 |
T |
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| Q |
219 |
aaaatctgaaacctcagcatcactagcaataacattgttacaaagaacactaagatacccctttg |
283 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2190421 |
aaaatctgaaacctcagtatcactagcaataacattgttacaaagaacactaagatacccctttg |
2190485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 25165903 - 25166107
Alignment:
| Q |
40 |
ctacaagcctccaaccaaacatcctcattcttcggacattcttcacatcctttcttaatcaataacctcgcttccttaaccttccccgccaactcctcca |
139 |
Q |
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||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||| ||| || ||| || ||| |||||||||||||||| |
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| T |
25165903 |
ctacaagcctccaaccacacatcttcattcttgggacattcttcacaccctttctgtatcaactgcctagccgcctgaagcttacccgccaactcctcca |
25166002 |
T |
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| Q |
140 |
gcctggcagccgcaatccatccacaagcatacttcggattcgttcgagtaacactctttaacaacaacatcgccttattaaaatctgaaacctcagcatc |
239 |
Q |
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||| ||||| |||||||| ||| || || ||||||||||| ||||||||||||| ||||||||| | ||||| |||||||| |||| ||||||||| |
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| T |
25166003 |
accttgcagcagcaatccaaccaggaggatgtttcggattcgtctgagtaacactcttcaacaacaacctagccttcttaaaatcagaaatctcagcatc |
25166102 |
T |
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| Q |
240 |
actag |
244 |
Q |
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||||| |
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| T |
25166103 |
actag |
25166107 |
T |
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