View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_22 (Length: 256)
Name: NF17285_low_22
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 41303302 - 41303079
Alignment:
| Q |
18 |
aatgagataataggagagcttacctcatgattattcttggcgagagggtcaggtattgtggaaaatggggactcttgagttccttgatcgatatactctt |
117 |
Q |
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| T |
41303302 |
aatgagataataggagagcttacctcatgattattctcggtgagagggtcgggtattgtggagaatggggactcttgagttccttgatcgatatactctt |
41303203 |
T |
|
| Q |
118 |
cattaacgggaaccacttcgctagtagaagctttttcactagaatgatcattttcattctcaacatcagttatgcttcaatttagcatttctgaaagttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41303202 |
cattaacgggaaccacttcgctagtagaagctttttcactagaatgatccttttcattctcaacatcagttatgcttaaatttagcatttctgaaagttc |
41303103 |
T |
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| Q |
218 |
accatgtattactccttcacctat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
41303102 |
accatgtattactccttcacctat |
41303079 |
T |
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