View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_26 (Length: 227)
Name: NF17285_low_26
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 30934602 - 30934800
Alignment:
| Q |
14 |
ataatacttgtaatgagtaaccgatgaacattgaaggagttgataggcaaagagggttgcctttgagtgaaacgatcaagatagacatatgcaacaatga |
113 |
Q |
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| T |
30934602 |
ataacacttgtaatgagtaaccgatgaacattgaaggagttgataggcaaagagggttgtctttgagtgaaacgatcaagatagacatatgcaacaatga |
30934701 |
T |
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| Q |
114 |
aacaggatggactacaattggcatacttgaaaattctctcaaggtagttctgaattgagatattgggacaagtcaagccttgaaaaactgagatcttct |
212 |
Q |
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| T |
30934702 |
aacaggatggactacaattggcatacttgaaaattctctcaaggtagttctgaattgagatattgggacaagtcaagccttgaaaaactgagatcttct |
30934800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 1500327 - 1500188
Alignment:
| Q |
35 |
cgatgaacattgaaggagttgataggcaaagagggttgcctttgagtgaaacgatcaagatagacatatgcaacaatgaaacaggatggactacaattgg |
134 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| || || | ||||||||| | |
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| T |
1500327 |
cgatgaacattgaaggagttgataggcaaagaaggttgagtttgagtgaaacgatcaaggtagacataagcaacaatgaagcatgaagaactacaatttg |
1500228 |
T |
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| Q |
135 |
catacttgaaaattctctcaaggtagttctgaattgagat |
174 |
Q |
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| T |
1500227 |
catacttgaaaattctctcaagatagctttgaattgagat |
1500188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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