View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17285_low_29 (Length: 215)
Name: NF17285_low_29
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_29 |
 | |
|
| [»] scaffold0174 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0174 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 30478 - 30422
Alignment:
| Q |
15 |
cacagaaacaaaagaaatacggaaagggaaaaaagagagcaacataaacacatacaa |
71 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
30478 |
cacaaaaacaaaagaaatacggaaagggaaaaaagacagcagcataaacacatacaa |
30422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 4730598 - 4730542
Alignment:
| Q |
15 |
cacagaaacaaaagaaatacggaaagggaaaaaagagagcaacataaacacatacaa |
71 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
4730598 |
cacaaaaacaaaagaaataccgaaagggaaaaaagacagcaatataaacacatacaa |
4730542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University