View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17285_low_3 (Length: 759)

Name: NF17285_low_3
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17285_low_3
NF17285_low_3
[»] chr3 (1 HSPs)
chr3 (357-468)||(45903407-45903518)
[»] chr6 (6 HSPs)
chr6 (358-468)||(23594519-23594629)
chr6 (122-282)||(32739580-32739740)
chr6 (357-470)||(14277210-14277323)
chr6 (358-468)||(26377900-26378010)
chr6 (92-282)||(29133195-29133383)
chr6 (514-591)||(29140890-29140967)
[»] chr1 (8 HSPs)
chr1 (364-468)||(19595974-19596078)
chr1 (357-468)||(32495723-32495834)
chr1 (358-468)||(46336402-46336512)
chr1 (356-468)||(43997149-43997261)
chr1 (393-468)||(43632938-43633013)
chr1 (359-468)||(11692551-11692661)
chr1 (358-406)||(19887028-19887076)
chr1 (282-327)||(39647086-39647131)
[»] chr5 (3 HSPs)
chr5 (358-468)||(39305458-39305568)
chr5 (382-468)||(17540054-17540140)
chr5 (375-468)||(9625448-9625541)
[»] chr4 (6 HSPs)
chr4 (358-468)||(12240657-12240767)
chr4 (358-468)||(49620674-49620784)
chr4 (363-466)||(24851008-24851111)
chr4 (525-630)||(9572096-9572202)
chr4 (360-468)||(23666587-23666695)
chr4 (642-699)||(37899348-37899405)
[»] scaffold1603 (1 HSPs)
scaffold1603 (359-468)||(972-1081)
[»] chr8 (2 HSPs)
chr8 (356-468)||(13083588-13083700)
chr8 (356-468)||(41388868-41388981)
[»] chr7 (7 HSPs)
chr7 (358-468)||(41985336-41985446)
chr7 (358-449)||(19681049-19681140)
chr7 (358-468)||(4926101-4926211)
chr7 (382-468)||(14792361-14792447)
chr7 (363-468)||(7260257-7260362)
chr7 (358-465)||(1264952-1265060)
chr7 (358-412)||(1261986-1262040)
[»] chr2 (3 HSPs)
chr2 (358-468)||(38992799-38992909)
chr2 (356-416)||(26692003-26692063)
chr2 (358-443)||(26691907-26691990)
[»] scaffold0027 (1 HSPs)
scaffold0027 (356-466)||(21950-22055)
[»] scaffold0613 (1 HSPs)
scaffold0613 (503-556)||(4018-4071)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 357 - 468
Target Start/End: Complemental strand, 45903518 - 45903407
Alignment:
Q  357 cggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgga 456  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  45903518 cggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacaga 45903419  T
Q  457 tttcaacaattt 468  Q
    ||||||||||||    
T  45903418 tttcaacaattt 45903407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 358 - 468
Target Start/End: Original strand, 23594519 - 23594629
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||    
T  23594519 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacaaat 23594618  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  23594619 ttcaacaattt 23594629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 32739740 - 32739580
Alignment:
Q  122 gatttttacaagagactgtcggtttggagtaggaacgtacatttgtggtgcggaagagatgttcgtcaaggcaaaaactat-gagttttatagacaagtt 220  Q
    |||||||||||| ||||||||||||||| | |||| || |||||||| ||||||  ||||||||||| |||||||| |||| |||||||||||||||| |    
T  32739740 gatttttacaagtgactgtcggtttggaattggaatgtgcatttgtgttgcggacaagatgttcgtctaggcaaaa-ctattgagttttatagacaagct 32739642  T
Q  221 tgttcttctccaactcacttagtagctgaaaccatgtcgacgacgatggagtgtgtcaagct 282  Q
    ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32739641 tgtacttgtccaactcacttagtagctgaaaccatgtcgacaacgatggagtgtgtcaagct 32739580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 357 - 470
Target Start/End: Original strand, 14277210 - 14277323
Alignment:
Q  357 cggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgga 456  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||| |    
T  14277210 cggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccgtcaattcatgatctgacgattccaattcacagcacgaa 14277309  T
Q  457 tttcaacaatttaa 470  Q
    ||||||||||||||    
T  14277310 tttcaacaatttaa 14277323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 26378010 - 26377900
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  ||    
T  26378010 ggatcaggatttgttgttgtagcaaattcacacagtttgccgcagtagcaaatctcagtcatcaatccatgatctgacggttccaattcacagcacaaat 26377911  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  26377910 ttcaacaattt 26377900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 92 - 282
Target Start/End: Original strand, 29133195 - 29133383
Alignment:
Q  92 gggggaagtcaagtgcaacgttgatgctacgatttttacaagagactgtcggtttggagtaggaacgtacatttgtggtgcggaagagatgttcgtcaag 191  Q
    ||||||||| |||||||||||||| ||||   |||||| | | ||||||||| ||||| ||  || || ||||  || |||  | |||||||| ||  ||    
T  29133195 gggggaagtgaagtgcaacgttgacgctaaattttttaaatgtgactgtcggcttggaataataatgtgcattcatgttgccaaggagatgtttgttgag 29133294  T
Q  192 gcaaaaactatgagttttatagacaagtttgttcttctccaactcacttagtagctgaaaccatgtcgacgacgatggagtgtgtcaagct 282  Q
    |||||||||  |||||| |||||| || |||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  29133295 gcaaaaact--gagtttgatagacgagcttgttcttgtccaacttacttactagctgaaaccatgtcgacaacgatggagtgtgtcaagct 29133383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 591
Target Start/End: Original strand, 29140890 - 29140967
Alignment:
Q  514 acttctatatgaataacttgataatctaatgagcagcaaatctgtttttgaaattctattacattcttccagcaatat 591  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| | |||||| ||  |||||||| | ||||||||||    
T  29140890 acttctatatgaaaaacttgataatctaatgagcaacaaatctctatttgaactttcattacattgtaccagcaatat 29140967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 7e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 19595974 - 19596078
Alignment:
Q  364 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaac 463  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19595974 ggatttgctgttgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaac 19596073  T
Q  464 aattt 468  Q
    |||||    
T  19596074 aattt 19596078  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 357 - 468
Target Start/End: Original strand, 32495723 - 32495834
Alignment:
Q  357 cggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgga 456  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |    
T  32495723 cggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacacaaa 32495822  T
Q  457 tttcaacaattt 468  Q
    |||||| |||||    
T  32495823 tttcaataattt 32495834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 46336512 - 46336402
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||    
T  46336512 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatttgacggttccaattcacagcacaaat 46336413  T
Q  458 ttcaacaattt 468  Q
    ||||| |||||    
T  46336412 ttcaataattt 46336402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 43997149 - 43997261
Alignment:
Q  356 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgg 455  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||      
T  43997149 acggatctggatttgctgctgtagcaaattcacacagtttatcgcagttgcaaatctcagccatcaattcatgatctgacggtttcaattcacagcacat 43997248  T
Q  456 atttcaacaattt 468  Q
    |||||||||||||    
T  43997249 atttcaacaattt 43997261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 393 - 468
Target Start/End: Complemental strand, 43633013 - 43632938
Alignment:
Q  393 tttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 468  Q
    ||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  43633013 tttgctgctgtagcaaatctcaaccatcaatccatgatctgacggttccaattcacagcacgaaattcaacaattt 43632938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 11692661 - 11692551
Alignment:
Q  359 gatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctg-tcggttccaattcacagcacggat 457  Q
    ||||||||| ||||| |||||||||||||| |||||||| | ||||| ||||||||||||||||||||| | ||| ||| ||| ||||||||  || |||    
T  11692661 gatctggatatgctggtgtagcaaattcacgcagtttgctgtagtagaaaatctcagccatcaatccataacctgatcgtttcaaattcacaataccgat 11692562  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  11692561 ttcaacaattt 11692551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 19887076 - 19887028
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagc 406  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  19887076 ggatctggatttactgttgtagcaaattcacacagtttgccgcagtagc 19887028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 39647131 - 39647086
Alignment:
Q  282 tccgttttcatacttgttcttgttcatgcaagaccttccgctactt 327  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||    
T  39647131 tccgttttcaaacttgttcttgttcatgctagacctgccgctactt 39647086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 358 - 468
Target Start/End: Original strand, 39305458 - 39305568
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||    
T  39305458 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaat 39305557  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  39305558 ttcaacaattt 39305568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 382 - 468
Target Start/End: Complemental strand, 17540140 - 17540054
Alignment:
Q  382 aattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 468  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||    
T  17540140 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacagcacaaatttcaacaattt 17540054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 9625448 - 9625541
Alignment:
Q  375 tgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 468  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  9625448 tgtagcaaattcacacagtttgtcgcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaattt 9625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 12240767 - 12240657
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||    
T  12240767 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcataaat 12240668  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  12240667 ttcaacaattt 12240657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 49620784 - 49620674
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||    
T  49620784 ggatcaggatttgttgctgtagcaaattcacatagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaat 49620685  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  49620684 ttcaacaattt 49620674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 363 - 466
Target Start/End: Complemental strand, 24851111 - 24851008
Alignment:
Q  363 tggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaa 462  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  24851111 tggatttgctgctgtagcaaattcacacagttttccgcagtagtaaatctcatccatcaatccatgatctgacggttccaattcacaacacagatttcaa 24851012  T
Q  463 caat 466  Q
    ||||    
T  24851011 caat 24851008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 525 - 630
Target Start/End: Original strand, 9572096 - 9572202
Alignment:
Q  525 aataacttgataatctaatgagcagcaaatctgtttttgaaattctattacattcttccagcaa-tatgtatccactgtgtttttcttttgcattccaaa 623  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  9572096 aataacttgataatctaatgagcagcaaatctctctttgaaattctattacattcttccagaaattatgtatccactatgtttttcttttgcattccaaa 9572195  T
Q  624 ttctaat 630  Q
    | |||||    
T  9572196 tcctaat 9572202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 360 - 468
Target Start/End: Original strand, 23666587 - 23666695
Alignment:
Q  360 atctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggattt 459  Q
    |||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||| ||| | |||||||||||| || |||||||||    
T  23666587 atctggatttgctgctgtagcaaattcacacagtttgccgtaggagaaaatctcagtcatcaatccataatccgacggttccaattcgcaacacggattt 23666686  T
Q  460 caacaattt 468  Q
    |||||||||    
T  23666687 caacaattt 23666695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 699
Target Start/End: Original strand, 37899348 - 37899405
Alignment:
Q  642 gttcttgatgctaggatgtttatggctattgatgtttgtggtaatgatgacggagaaa 699  Q
    |||||||||| || | ||||||||||| ||||||||||| |||||| |||||||||||    
T  37899348 gttcttgatgttatggtgtttatggcttttgatgtttgttgtaatggtgacggagaaa 37899405  T

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Target: scaffold1603 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 1081 - 972
Alignment:
Q  359 gatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatt 458  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  1081 gatctgaatttgctgctgtagcaaattcacacagtttgtcgcagtagcaaatctcaaccatcaattcatgatctgacggttccaattcacagcacggatt 982  T
Q  459 tcaacaattt 468  Q
    ||||||||||    
T  981 tcaacaattt 972  T

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Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 13083588 - 13083700
Alignment:
Q  356 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgg 455  Q
    |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  13083588 acggatctggatttactgttgtagcaaatttacacagtttgccgcagtagcaaatctcagcgatcaatccatgatctgatggttccaattcacagcacgg 13083687  T
Q  456 atttcaacaattt 468  Q
    |||||||||||||    
T  13083688 atttcaacaattt 13083700  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 41388868 - 41388981
Alignment:
Q  356 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttc-caattcacagcacg 454  Q
    ||||| ||| ||||| || |||||||||||||||| ||||| ||||||||||||||||  ||||||||  ||||| || ||||||  |||||||| | ||    
T  41388868 acggacctgaatttgatgttgtagcaaattcacacggtttgtcgcagtagcaaatctcgaccatcaatttatgatatgacggttctaaattcacatctcg 41388967  T
Q  455 gatttcaacaattt 468  Q
    ||||||||||||||    
T  41388968 gatttcaacaattt 41388981  T

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Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 41985446 - 41985336
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  41985446 ggatctggatttgctgccgtagcaaattcacacaatttgtcgcagtagcaaatctcagccatcaatccatgatccgacggttccaattcacaacacggat 41985347  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  41985346 ttcaacaattt 41985336  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 358 - 449
Target Start/End: Complemental strand, 19681140 - 19681049
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcaca 449  Q
    ||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19681140 ggatcaggatttaccgttgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcaca 19681049  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 358 - 468
Target Start/End: Original strand, 4926101 - 4926211
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||  |||||| |||||  |||||  ||    
T  4926101 ggatcaggatttgctgctgtagcaaattcacacagtttgctgctgtagcaaatctcagccatcaatccatgatctaacggttctaattcgtagcacaaat 4926200  T
Q  458 ttcaacaattt 468  Q
    |||||||||||    
T  4926201 ttcaacaattt 4926211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 382 - 468
Target Start/End: Original strand, 14792361 - 14792447
Alignment:
Q  382 aattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaacaattt 468  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||  |||||||||||||    
T  14792361 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacaacacaaatttcaacaattt 14792447  T

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Target: chr7; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 363 - 468
Target Start/End: Original strand, 7260257 - 7260362
Alignment:
Q  363 tggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggatttcaa 462  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||| ||||| ||||||  ||||| ||    
T  7260257 tggatttgctgctatagcaaattcacacagtttgccgcagtagtaaatctcagccatcaatctatgatctgactgtttcaatttacagcaaagattttaa 7260356  T
Q  463 caattt 468  Q
    ||||||    
T  7260357 caattt 7260362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 358 - 465
Target Start/End: Complemental strand, 1265060 - 1264952
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctg-tcggttccaattcacagcacgga 456  Q
    |||||||||||||||||||||||||||||| |||||||||   | ||| ||||||||||||||||| ||||||||| | | ||| |||||||||||| ||    
T  1265060 ggatctggatttgctgctgtagcaaattcaaacagtttgctataatagtaaatctcagccatcaattcatgatctgatggtttcaaattcacagcacaga 1264961  T
Q  457 tttcaacaa 465  Q
    ||| |||||    
T  1264960 ttttaacaa 1264952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 412
Target Start/End: Original strand, 1261986 - 1262040
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatct 412  Q
    |||| |||||||| || |||| |||||||||||||||||||||||||||||||||    
T  1261986 ggatttggatttgttgttgtaccaaattcacacagtttgccgcagtagcaaatct 1262040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 38992909 - 38992799
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacggat 457  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||| ||||| |||    
T  38992909 ggatcaggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgaaggttgcaattcaaagcacagat 38992810  T
Q  458 ttcaacaattt 468  Q
    ||||| |||||    
T  38992809 ttcaataattt 38992799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 26692063 - 26692003
Alignment:
Q  356 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagc 416  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26692063 acggatttggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagc 26692003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 443
Target Start/End: Original strand, 26691907 - 26691990
Alignment:
Q  358 ggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaa 443  Q
    |||||||||||| ||||||||||||||||| |||||  ||||||||||||||| ||||||| ||||||||||| || ||| |||||    
T  26691907 ggatctggatttactgctgtagcaaattcaaacagt--gccgcagtagcaaatttcagccagcaatccatgatatgacgggtccaa 26691990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 356 - 466
Target Start/End: Complemental strand, 22055 - 21950
Alignment:
Q  356 acggatctggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgtcggttccaattcacagcacgg 455  Q
    ||||||||||||||| || |||| |||||||||||||||||  ||||||||||||     |||||||||||||||||| |||||||||||||||  || |    
T  22055 acggatctggatttgttgttgtaacaaattcacacagtttgttgcagtagcaaat-----ccatcaatccatgatctgacggttccaattcacaatacag 21961  T
Q  456 atttcaacaat 466  Q
    |||| ||||||    
T  21960 attttaacaat 21950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 556
Target Start/End: Original strand, 4018 - 4071
Alignment:
Q  503 atgttgaaataacttctatatgaataacttgataatctaatgagcagcaaatct 556  Q
    |||| ||||||||||| ||||| | ||||||||||||||||||| | |||||||    
T  4018 atgtagaaataacttcaatatggaaaacttgataatctaatgagaatcaaatct 4071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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