View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_4 (Length: 576)
Name: NF17285_low_4
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 561
Target Start/End: Complemental strand, 39088981 - 39088432
Alignment:
| Q |
13 |
aatatctcttattggtgatctcccgttttatcggagatccacttctaatatagtgggacctacatgaattttacccaataaaagagtgttagagtgagta |
112 |
Q |
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| T |
39088981 |
aatatctcttattggcgatctcccgttttatcggagatccacttctaatatagtgggacctacatgaattttacccaataaaagagtgttagagtgagta |
39088882 |
T |
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| Q |
113 |
ttggcagttctcattttatgaatattagttcacattgtttatctattgatatagtggttcgactattgacacactaaccttgtaccctgatcaagttgat |
212 |
Q |
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| T |
39088881 |
ttggcagtactcattttatgaatattagttcacattgtttatctattgatatagtggttcgactattgacacactaaccttgtaccctgatcaagtcgat |
39088782 |
T |
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| Q |
213 |
gat-ggtttgactttaataacattgcttttgcctaccaatcattattttaaagttctgcctctttcagaggatgcattgcctaatcgatgcatgatgctg |
311 |
Q |
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| T |
39088781 |
gattggtttgactttaataacattgcttttgcctaccaatcattattttaaagttctgcctctttcagaggatgcattgcctaatcgatgcatgatgctg |
39088682 |
T |
|
| Q |
312 |
tttttgtttattgcagatgggttatttaagctcccataccgcgttgtatttgccgtggccacattgaattcattgtacatttatgacactgagagcactt |
411 |
Q |
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| T |
39088681 |
tttttgtttattgcagatgggttatttaagctcccatatcgcgttgtatttgccgtggccacattgaattcattgtacatttatgacactgagagcactt |
39088582 |
T |
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| Q |
412 |
ctccaatagcaatatttgctggccttcactatgctccagtaacagatattacctggtaaatgttataacggctagtaaatcattttctagttagaattat |
511 |
Q |
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| T |
39088581 |
ctccaatagcaatatttgctggccttcactatgctccagtaacagatattacctggtaaatgttataacggctagtaaatcattttctagttagaattat |
39088482 |
T |
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| Q |
512 |
gatggnnnnnnnngggaaaggtttaattgtagtccgtatttgttcaaaag |
561 |
Q |
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| T |
39088481 |
gatgtttttttttgggaaaggtttaattgtagtccgtatttgttcaaaag |
39088432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 6992854 - 6992812
Alignment:
| Q |
55 |
ttctaatatagtgggacctacatgaattttacccaataaaaga |
97 |
Q |
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| T |
6992854 |
ttctaaaatagtgggacccacatgaatttcacccaataaaaga |
6992812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 33481005 - 33480968
Alignment:
| Q |
74 |
acatgaattttacccaataaaagagtgttagagtgagt |
111 |
Q |
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| T |
33481005 |
acatgaattttgtccaataaaagagtgttagagtgagt |
33480968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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