View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17285_low_5 (Length: 541)
Name: NF17285_low_5
Description: NF17285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17285_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 11624679 - 11624891
Alignment:
| Q |
14 |
cagagatggtgatgtggcgataatgtgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccgcctgcagtcca |
113 |
Q |
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| T |
11624679 |
cagagatggtgatgtggcgataatgcgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttccacctgcagtcca |
11624778 |
T |
|
| Q |
114 |
atatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacagg |
213 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11624779 |
atatctttgacacgccttgcagaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgcagcgtggacacagg |
11624878 |
T |
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| Q |
214 |
agtaatttgtctg |
226 |
Q |
| |
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||||||||||||| |
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| T |
11624879 |
agtaatttgtctg |
11624891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 299 - 523
Target Start/End: Original strand, 11624964 - 11625182
Alignment:
| Q |
299 |
aagtttcttcatctatggaaggtgtttttgggttctgaataccctccggtaatgttgctgctgaattgttgttgttcttgatctctgcggcatccggtgg |
398 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
11624964 |
aagtttcttcatctatggaaggtgtttttgggtt------accctccggtaatgttgctgctgaattgttgttgttcttgatctctgctgcatctggtgg |
11625057 |
T |
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| Q |
399 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagacac |
498 |
Q |
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| T |
11625058 |
aggatcagcttctttcttttcctcagtatctttatctgcttcaggatcctattaatttgacacaagttttcattaaaggttaacgatgaacatgagacat |
11625157 |
T |
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| Q |
499 |
ggcaccaacactaacatgtcgacac |
523 |
Q |
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| T |
11625158 |
ggcaccaacactaacatgtcgacac |
11625182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 31771910 - 31771803
Alignment:
| Q |
82 |
ggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaact |
181 |
Q |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
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| Q |
182 |
ttgtgtcc |
189 |
Q |
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| T |
31771810 |
tggtgtcc |
31771803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 2823737 - 2823621
Alignment:
| Q |
73 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
172 |
Q |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagt |
2823638 |
T |
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| Q |
173 |
aacagaactttgtgtcc |
189 |
Q |
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| T |
2823637 |
agcagaacttcgtgtcc |
2823621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 18193495 - 18193381
Alignment:
| Q |
95 |
tggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgct |
194 |
Q |
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| T |
18193495 |
tggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaattattgtagtaacaaaattttgtgtctacgct |
18193396 |
T |
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| Q |
195 |
gttgcagcgtggaca |
209 |
Q |
| |
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||||| | |||||| |
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| T |
18193395 |
tttgcatcttggaca |
18193381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 18188204 - 18188160
Alignment:
| Q |
145 |
ggctgattgacgttgtaattattgtagtaacagaactttgtgtcc |
189 |
Q |
| |
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| T |
18188204 |
ggctggttggcgttgtaattattgtagtaacaaaattttgtgtcc |
18188160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
85 |
acatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttg |
184 |
Q |
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||||||||||||| ||| || |||||||| ||||| || || ||||||||||| ||| || || || || ||||| ||||||||||| ||||| || | |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
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| Q |
185 |
tgtcc |
189 |
Q |
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||||| |
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| T |
3775600 |
tgtcc |
3775596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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