View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17286_low_1 (Length: 469)
Name: NF17286_low_1
Description: NF17286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17286_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 4865012 - 4865344
Alignment:
| Q |
17 |
agaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacatttatttattcttataaacattgagaggtaggaagggaaatttctgtg |
116 |
Q |
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| T |
4865012 |
agaaggattgattatgttgttgttgttgaggtttggaatgctagaagttacatttatttattcttataaacattgaaaggtaggaagggaaatttctgtg |
4865111 |
T |
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| Q |
117 |
aaattgacaactttgaaatggtcaaaagatctctttgttacaaaatccacattaaaataattatggctgcattttaaagtagtcacatt----nnnnnnn |
212 |
Q |
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| T |
4865112 |
aaattgacaactttgaaatggtcaaaagatctctttgttacaaaaaccacattaaaataattatggctgcattttaaagtagtcacattaaaaaaaaaaa |
4865211 |
T |
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| Q |
213 |
ncagtggcgactacatcaccattttcatattttaaactctcactctcattaagtgaaagagctggtcatgtaaatgaaagaggggtaaaatttcccatac |
312 |
Q |
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| T |
4865212 |
acagtggcgactacatcaccattatcatattttaaactctcactctcattaagtgaaagagctggtcctgtaaatgaaatagaggtaaaatttcccatac |
4865311 |
T |
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| Q |
313 |
atcattggagtatgtaatttttattaagaaagc |
345 |
Q |
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| T |
4865312 |
atcattggagtatgtaatttttattaagaaagc |
4865344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 379 - 458
Target Start/End: Original strand, 4865344 - 4865431
Alignment:
| Q |
379 |
cagatgagaaagagggcacataacatcactaaagacagttag--------gcaagttatctcttaattaggaaagatttcattttcat |
458 |
Q |
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| T |
4865344 |
cagatgagaaagagggcacataacatcactaaagacagttagcttggagcgcaagttatctcttaattaggaaagatttcattttcat |
4865431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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