View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17286_low_3 (Length: 248)
Name: NF17286_low_3
Description: NF17286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17286_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 39871814 - 39871688
Alignment:
| Q |
101 |
ccacacttaatgttgtgatataatttcctagtggcttctcattctctttgtccctgtatgctctgccttccaatgattacctaccctgctttcttcactc |
200 |
Q |
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| T |
39871814 |
ccacacttaatgttgtgatataatttcctagtggcttctcattctctttgtccctgtatgctctgccttccaatgattacctaccctgctttcttcactt |
39871715 |
T |
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| Q |
201 |
cttgccccttaaaaatcccttggccca |
227 |
Q |
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| T |
39871714 |
cttgccccttcaaaatcccttggccca |
39871688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 39871871 - 39871840
Alignment:
| Q |
44 |
agttaaaacataaaccataccaagttggcttc |
75 |
Q |
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| T |
39871871 |
agttaaaacataaaccataccaagttggcttc |
39871840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 38805937 - 38806051
Alignment:
| Q |
116 |
tgatataatttcctagtggcttctcattctctttgtccctgtatgctctgccttccaatgattacctaccctgctttcttcactccttgccccttaaaaa |
215 |
Q |
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| T |
38805937 |
tgatataatttcctagtggcttctcattctctttgtccctctgtgctctgccttccaatgattacctaccctgctttcttcactccttgccccttcaaaa |
38806036 |
T |
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| Q |
216 |
tcccttggcccaagt |
230 |
Q |
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| T |
38806037 |
tccattggcccaagt |
38806051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 35382722 - 35382668
Alignment:
| Q |
101 |
ccacacttaatgttgtgatataatttcctagtggcttctcattctctttgtccct |
155 |
Q |
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| T |
35382722 |
ccacacttattgttgtcatataatttcctagtggcttctcattctctttgtccct |
35382668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 35382659 - 35382616
Alignment:
| Q |
187 |
tgctttcttcactccttgccccttaaaaatcccttggcccaagt |
230 |
Q |
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| T |
35382659 |
tgctttcttcactccttgccccttcaaaatcccttggcccaagt |
35382616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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