View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_11 (Length: 529)
Name: NF17287_high_11
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 522
Target Start/End: Complemental strand, 8088449 - 8087942
Alignment:
| Q |
17 |
agcaactaattgactttaactatacagtttgcagtagatataaactgcagatgcagggtaatcattagtccgctgcaacttcnnnnnnncacgaggtatt |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8088449 |
agcaactgattgactttaactatacagtttgcagtagatataaactgcagatgcagggtaatcattagtccgctgcaacttctttttttcacgaggtatt |
8088350 |
T |
|
| Q |
117 |
gtccgctttgggtaaagcatctagcgtaaactctcatggctttgtcctttgttaaaaggcgtctcataggtggttataaaccatccttagcctaaattat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8088349 |
gtccgctttgggtaaagcatctagcgtaaactctcatggctttgtcctttgttaaaaggcgtctcgtaggtggttataaaccatccttagcctaaattat |
8088250 |
T |
|
| Q |
217 |
gaagctatgtgtcactttttggtgtaatggaagagttgtcactagtcaaggctaaggaactaaagggtttgttagctctcgtatgtgacttggaccctcc |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8088249 |
gaagctatgtgtcactttttggtgtaatggaagagttgtcactagtcaaggctaaggaactaaagggtttgttagctctcgtatgtggcttggaccctcc |
8088150 |
T |
|
| Q |
317 |
ttctcagacagagccgacattcggacctcaagtcagctgcaccgcatttctgaagtattattcattttgaatcttgtgtgagccctcgtagatttgtact |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8088149 |
ttctcagacagagccgacattcggacctcaagtcagctgcaccgcatttctgaagtattattcattttgaatcttgtgtgagccctcgtagatttgtact |
8088050 |
T |
|
| Q |
417 |
taattgaaagacacttcagtgggttgaggagagtacgtgtttgttaatcgtccttagtttcgattttcaaatat--taagactttttggtgtatcagaat |
514 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
8088049 |
taattgaaagacacttcagtgagttgaggagagtacgtgtttgttaatcgtccttagtttcgattctcaaatattgtaagactttttggtgtatcagaat |
8087950 |
T |
|
| Q |
515 |
agaattat |
522 |
Q |
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| T |
8087949 |
agagttat |
8087942 |
T |
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