View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_high_15 (Length: 498)

Name: NF17287_high_15
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_high_15
NF17287_high_15
[»] chr1 (5 HSPs)
chr1 (196-454)||(32953549-32953809)
chr1 (53-199)||(32953837-32953982)
chr1 (99-163)||(32919847-32919911)
chr1 (94-163)||(32936346-32936416)
chr1 (19-59)||(32954674-32954714)
[»] chr2 (1 HSPs)
chr2 (290-439)||(36033641-36033789)
[»] chr5 (1 HSPs)
chr5 (274-488)||(27983575-27983788)
[»] chr7 (1 HSPs)
chr7 (263-412)||(7805576-7805725)
[»] scaffold0011 (1 HSPs)
scaffold0011 (281-424)||(228836-228978)
[»] chr8 (2 HSPs)
chr8 (340-428)||(37080819-37080911)
chr8 (368-433)||(35739654-35739721)
[»] chr6 (1 HSPs)
chr6 (348-433)||(29521794-29521879)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 196 - 454
Target Start/End: Complemental strand, 32953809 - 32953549
Alignment:
Q  196 ttgtcacaatcgcgttaaggttgtcgcaatttcgactgttgctgatgtctgcgttacagattgcggtcacaattaccttcaccacttactctcactcacc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32953809 ttgtcacaatcgcgttaaggttgtcgcaatttcgactgttgctgatgtttgcgttacagattgcggtcacaattaccttcaccagttactctcactcacc 32953710  T
Q  296 ccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctc 395  Q
    |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32953709 ccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctc 32953610  T
Q  396 tatagtccgaactcacaacc--atattcacacagagacaaactcaaactcaaaattccaac 454  Q
    ||||||||||||||||||||  |||||| |||| |||||||||||||||||||||||||||    
T  32953609 tatagtccgaactcacaaccatatattcgcacaaagacaaactcaaactcaaaattccaac 32953549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 32953982 - 32953837
Alignment:
Q  53 tttcaccatatggctttcattttctctaattcaactgacatttttatattttgtggtgtgtaatgagttaagaaatgcacattatgataatcaactatct 152  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32953982 tttcaccatatggctttcattttctctaattcaactgtcatttttatattttgtggtgtgta-tgagttaagaaatgcacattatgataatcaactatct 32953884  T
Q  153 tgttctcctttcttttagatttgattgagaattttatttgtttttgt 199  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  32953883 tgttctcctttctttcagatttgattgagaattttatttgtttttgt 32953837  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 32919911 - 32919847
Alignment:
Q  99 tattttgtggtgtgtaatgagttaagaaatgcacattatgataatcaactatcttgttctccttt 163  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||    
T  32919911 tattttgtggtgtgtaatgagttatggaatgcacattatgataatcaactatctttttctccttt 32919847  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 32936416 - 32936346
Alignment:
Q  94 ttttatattttgtggtgtgtaatgagttaagaaatgcac-attatgataatcaactatcttgttctccttt 163  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||    
T  32936416 ttttatattttatggtgtgtaatgaattaagaaatgcacaattatgataatcaactaccttgttcttcttt 32936346  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32954714 - 32954674
Alignment:
Q  19 aatgaaacctccacgttgtagatgaacctatcgatttcacc 59  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  32954714 aatgaaacctccacgttgtagatgaagctatcggtttcacc 32954674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 290 - 439
Target Start/End: Complemental strand, 36033789 - 36033641
Alignment:
Q  290 ctcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatct 389  Q
    |||||||||||||||||||||||| || ||||| || | || |||||| |||||||| || |||| |||||||| |||||||||||||||| ||||||||    
T  36033789 ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaacac-aaaaatct 36033691  T
Q  390 catctctatagtccgaactcacaaccatattcacacagagacaaactcaa 439  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36033690 catctctatagtccgaactcacaaccatattcacacaaagacacactcaa 36033641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 274 - 488
Target Start/End: Original strand, 27983575 - 27983788
Alignment:
Q  274 tcaccacttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattca 373  Q
    |||||||||||||||| ||| ||| ||||||||||| ||| ||||||||||||| |  |||| | |||||||| ||||||| |||||||| ||||| |||    
T  27983575 tcaccacttactctcagtcaacccgctttattctttgcaggttttactttcttactc-ttttccaatgtcacattattgaagcaagcaaccacgaactca 27983673  T
Q  374 taaa-caccaaaaatctcatctctatagtccgaactcacaaccatattcacacagagacaaactcaaactcaaaattccaacnnnnnnnnctcactaaaa 472  Q
    |||| ||| |||  ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| |||||||        ||| ||||||    
T  27983674 taaatcactaaagttctcatctctaaagtccaaactcacaaccatattcacacaaagacacactc-aactcaaagttccaacttttttttctctctaaaa 27983772  T
Q  473 tctcatttcacctatg 488  Q
    |||||||||| |||||    
T  27983773 tctcatttcatctatg 27983788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 412
Target Start/End: Original strand, 7805576 - 7805725
Alignment:
Q  263 cacaattaccttcaccacttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaa 362  Q
    |||||||||| ||||||||| |||| ||||||| ||||||||| |||| || || | |||||  | || |||| | ||||||| ||| |||| |||||||    
T  7805576 cacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaa 7805675  T
Q  363 caacgaattcataaacaccaaaaatctcatctctatagtccgaactcaca 412  Q
    | |||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  7805676 ctacgaattcataaacaccaaaaatcccatctctaaagtccaaactcaca 7805725  T

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Target: scaffold0011 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 424
Target Start/End: Original strand, 228836 - 228978
Alignment:
Q  281 ttactctcactcaccccactttattctttccagcttttactttcttaattatttttcgatgtcacaatattgaaacaagcaacaacgaattcataaacac 380  Q
    |||| |||||||||| ||||||| ||||||||| ||   |||||| | || |||| | |||||||  || | || |||||||| ||| ||||||||||||    
T  228836 ttaccctcactcacctcactttactctttccagatt---ctttctcatttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacac 228932  T
Q  381 caaaaatctcatctctatagtccgaact--cacaaccatattcaca 424  Q
    |||| |||||||||||| ||||||||||  ||||||||||||||||    
T  228933 caaatatctcatctctaaagtccgaactcacacaaccatattcaca 228978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 340 - 428
Target Start/End: Original strand, 37080819 - 37080911
Alignment:
Q  340 tgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctctatagtccgaa----ctcacaaccatattcacacaga 428  Q
    |||||||||| |||| |||||||| || |||||||||||||||| ||||||||||||| |||| |||    |||| |||||||||||||||||    
T  37080819 tgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaagtctgaactctctcagaaccatattcacacaga 37080911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 35739721 - 35739654
Alignment:
Q  368 aattcataaacaccaaaaatctcatctctatagtccgaact--cacaaccatattcacacagagacaa 433  Q
    ||||||||||||  |||||||||||||||| ||||| ||||  |||||||||||||||||| ||||||    
T  35739721 aattcataaacataaaaaatctcatctctaaagtccaaactcacacaaccatattcacacaaagacaa 35739654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 29521794 - 29521879
Alignment:
Q  348 tattgaaacaagcaacaacgaattcataaacaccaaaaatctcatctctatagtccgaactcacaaccatattcacacagagacaa 433  Q
    ||||||| |||| ||| | |||||||||||||  |||||||||||||||| |  || | ||||||||||| |||| ||| ||||||    
T  29521794 tattgaagcaaggaaccatgaattcataaacatgaaaaatctcatctctaaaacccaagctcacaaccatcttcatacaaagacaa 29521879  T

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