View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_16 (Length: 488)
Name: NF17287_high_16
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 29950000 - 29950476
Alignment:
| Q |
1 |
aaagtgatttgaatggtttgaagagttatctacattacctttttggtaagatttttgtgtcaccaaattaattatctttca-cataatttagtttgaaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || |
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| T |
29950000 |
aaagtgatttgaatggtttgaagagttatctacattacctttttggtaagatttttatgtcaccaaattaattatctttcaacataatttagtttgagat |
29950099 |
T |
|
| Q |
100 |
atatgtttc-aagttcttgttggcatgttgaggttaaggcttttgatctcctacaatttgtttcatgtataacaagaggtccaaattgccatgcttatat |
198 |
Q |
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| T |
29950100 |
atatgtttctaagttcttgttggtatgttgaggttaaggcttttgatctcctacaatttgtttcatgtataacaagaggtccaaattgccatgcttatat |
29950199 |
T |
|
| Q |
199 |
caaataaggaaacgaaaaataataagaagttggacatacaatgattttggggatgattggtttgtatgtcgtgacacttgttaaaagcttgtgtccaagt |
298 |
Q |
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| T |
29950200 |
caaataaggaaacgaaaaataataagaagttggacatacaatgatgttggggatgattggtttgtatgtcgtgatacttgttaaaagcttatgtccaagt |
29950299 |
T |
|
| Q |
299 |
ggattttaatatgcttggttcatcgaaaagcaaacccattgatgatgttagaaacgcttggtcattgtgatggaatgtcatgtaaaaaagacaatctatg |
398 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| || |
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| T |
29950300 |
ggattttaatatgcttggttcatcgaaaagcatacccattgatgatgttagaaacacttggtcatagtgatggaatgtcatataaaaaagacaatctctg |
29950399 |
T |
|
| Q |
399 |
catacttatctttggac-aaataaatagaatatattttgttaactgaacaaaatttataggattttcaagttgtaat |
474 |
Q |
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| T |
29950400 |
catacttatctttggacaaaataaatagaatatattttgttagttgaacaaaatttataggattttcaagttgtaat |
29950476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 29792570 - 29792462
Alignment:
| Q |
342 |
gatgttagaaacgcttggtcattgtgatggaatgtcatgtaaaaaagacaatctatgcatacttatctttggacaaa-taaatagaatatattttgttaa |
440 |
Q |
| |
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||||| |||||| | ||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29792570 |
gatgtcagaaacacctggtcattgtgatggaatgtcatat-aaaaatacaatccttgcatacttatctttggacaaattaaatagaatatattttgttag |
29792472 |
T |
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| Q |
441 |
ctgaacaaaa |
450 |
Q |
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||||||||| |
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| T |
29792471 |
ttgaacaaaa |
29792462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 31031464 - 31031362
Alignment:
| Q |
275 |
cttgttaaaagcttgtgtccaagtggattttaatatgcttggttcatcgaaaagcaaacccattgatgatgttagaaacgcttggtcattgtgatggaat |
374 |
Q |
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|||||| | ||||||||| |||||||||||||||| ||||||||| ||| |||| | | |||||| | |||||| | |||||||||||| |||||||| |
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| T |
31031464 |
cttgttgatagcttgtgtttaagtggattttaatatacttggttcaacgacgagcagaactattgatcacgttagagaggcttggtcattgcgatggaat |
31031365 |
T |
|
| Q |
375 |
gtc |
377 |
Q |
| |
|
||| |
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|
| T |
31031364 |
gtc |
31031362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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