View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_23 (Length: 416)
Name: NF17287_high_23
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14641265 - 14641475
Alignment:
| Q |
1 |
agcgaaagcgaagtgaaaatctttggaatccgttttgaactcactcgccgtcattcttccactcttcactgatcggtttcatcaatctccaccgcttcac |
100 |
Q |
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| T |
14641265 |
agcgaaagcgaagtgaaaatctttggaatccgttttgaactcactcgccgtcattcttccactcttcactgatcggtttcatcaatctccaccgcttcac |
14641364 |
T |
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| Q |
101 |
caccagattctgtggtgctttcaacccataatttttcaannnnnnnncttaattcaattcaagtaaagtaatgatttttattctggtttattctcctatc |
200 |
Q |
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| T |
14641365 |
caccagattctgtggtgctttcaacccataatttttcaattttttttcttaattcaattcaagtaaagtaatgatttttattctggtttattctcctatc |
14641464 |
T |
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| Q |
201 |
gcatgatcacc |
211 |
Q |
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| T |
14641465 |
gcatgatcacc |
14641475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 14641623 - 14641665
Alignment:
| Q |
357 |
ttgaagttatgctggacttcagagaaggttccaatgtgaaaag |
399 |
Q |
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| T |
14641623 |
ttgaagttatgctggacttcagagaaggttccaatgtgaaaag |
14641665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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