View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_high_3 (Length: 704)

Name: NF17287_high_3
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_high_3
NF17287_high_3
[»] chr8 (6 HSPs)
chr8 (378-664)||(27642842-27643149)
chr8 (172-329)||(27643198-27643355)
chr8 (86-174)||(27643379-27643467)
chr8 (114-169)||(27646199-27646254)
chr8 (172-241)||(8407426-8407494)
chr8 (58-91)||(27643673-27643706)
[»] chr2 (1 HSPs)
chr2 (172-255)||(10911518-10911601)
[»] chr1 (1 HSPs)
chr1 (173-255)||(28870673-28870755)
[»] chr3 (1 HSPs)
chr3 (172-242)||(34364083-34364149)
[»] chr7 (1 HSPs)
chr7 (180-250)||(43911303-43911377)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 378 - 664
Target Start/End: Complemental strand, 27643149 - 27642842
Alignment:
Q  378 gtatataccggtgaagaaattgacgagtctgagggtgattacgagtaatgagcctacgttgaatccttagagagtatctgtaagttcgctttagacccaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27643149 gtatataccggtgaagaaattgacgagtctgagggtgattacgagtaatgagcctacgttgaatccttagagagtgtctgtaagtacgctttagacccaa 27643050  T
Q  478 aaaataagcagttccaagtgcaatctcccacaacaccatgatcgcagagtttctaatacacctctctctattttcttataagcactttaat--------- 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  27643049 aaaataagcagttccaagtgcaatctcccacaacaccatgatcgcagagtttctaatacacctctctctattttcttataagcactttaatatttaatgt 27642950  T
Q  569 -----atttctcttaactactcagatttattcagccttgcattgttgcacaa----------gtttcttaagccgccacaatttgcgatcgcagtcacgt 653  Q
         ||||||||||   ||| |||||||||||| ||||||||||||| |||          ||||||||||||||||||||||||||||||||||||||    
T  27642949 aatatatttctctta---actgagatttattcagtcttgcattgttgcccaagtttcttttcgtttcttaagccgccacaatttgcgatcgcagtcacgt 27642853  T
Q  654 tttctcgatca 664  Q
    |||||||||||    
T  27642852 tttctcgatca 27642842  T

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Target: chr8; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 172 - 329
Target Start/End: Complemental strand, 27643355 - 27643198
Alignment:
Q  172 aatgccagattttgagcttataacttgtaaggtcatatgacaaaaacagagtcatttggtaacattttttctcacaagcttataattgattttttctagc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27643355 aatgccagattttgagcttataacttgtaaggtcatatgacaaaaacagagtcatttggtaacattttttctcaaaagcttataattgattttttctagc 27643256  T
Q  272 ttatagcttatttgataagcataatttactttcgctcaattggcttatagcttatgac 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27643255 ttatagcttatttgataagcataatttactttcgctcaattggcttatagcttatgac 27643198  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 27643467 - 27643379
Alignment:
Q  86 atttgaaaccataaccaactgcaccaagttatcactttcaaaagaatataacatatccatttcctcataaactagtaggatatagaaat 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27643467 atttaaaaccataaccaactgcaccaagttatcactttcaaaagaatataacatatccatttcctcataaactagtaggatatagaaat 27643379  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 27646254 - 27646199
Alignment:
Q  114 ttatcactttcaaaagaatataacatatccatttcctcataaactagtaggatata 169  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  27646254 ttatcactttcaaaataatattacacatccatttcctcataaactactaggatata 27646199  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 8407426 - 8407494
Alignment:
Q  172 aatgccagattttgagcttataacttgtaaggtcatatgacaaaaacagagtcatttggtaacatttttt 241  Q
    |||||||||||||||||||||| ||| |||| ||| |||||||||| ||| || || |||||||||||||    
T  8407426 aatgccagattttgagcttatagcttataagctcacatgacaaaaa-agactcgttaggtaacatttttt 8407494  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 27643706 - 27643673
Alignment:
Q  58 tacatatccactacacattgccattcacatttga 91  Q
    ||||||||||||||||||||||||||||||||||    
T  27643706 tacatatccactacacattgccattcacatttga 27643673  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 10911518 - 10911601
Alignment:
Q  172 aatgccagattttgagcttataacttgtaaggtcatatgacaaaaacagagtcatttggtaacattttttctcacaagcttata 255  Q
    ||||| |||||||||||||||| ||| |||| |||||| |||||||  || | |||| ||||| | ||||||||| ||||||||    
T  10911518 aatgctagattttgagcttatagcttataagttcatataacaaaaaacgacttatttagtaacttcttttctcacgagcttata 10911601  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 28870755 - 28870673
Alignment:
Q  173 atgccagattttgagcttataacttgtaaggtcatatgacaaaaacagagtcatttggtaacattttttctcacaagcttata 255  Q
    |||| |||||| ||||||||  ||| |||| || ||||||||||| |||  | ||||||||| ||||||||||||| ||||||    
T  28870755 atgcaagatttcgagcttatggcttataagctcgtatgacaaaaaaagacccgtttggtaactttttttctcacaaacttata 28870673  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 34364083 - 34364149
Alignment:
Q  172 aatgccagattttgagcttataacttgtaaggtcatatgacaaaaacagagtcatttggtaacattttttc 242  Q
    ||||| |||||||||||||||| ||| |||| || ||||||||||||    || |||||||||||||||||    
T  34364083 aatgcaagattttgagcttatagcttataagctcgtatgacaaaaac----tcttttggtaacattttttc 34364149  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 43911377 - 43911303
Alignment:
Q  180 attttgagcttataacttgtaaggtc--atatgacaaaaacagagtcatttggtaaca--ttttttctcacaagc 250  Q
    |||||||||||||||||| |||| ||  ||||||| |||| ||| |||||||||||||  | |||||||||||||    
T  43911377 attttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctcacaagc 43911303  T

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