View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_34 (Length: 362)
Name: NF17287_high_34
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 35602210 - 35602546
Alignment:
| Q |
18 |
catgactctccgacaacaaagaatcgaagtcccttt-aaggtttctctcacaagacttcaggttcataagaaactctgtagacatcatttacacaagtta |
116 |
Q |
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| T |
35602210 |
catgactctccgacaacaaagaatcgaagtcccttttaaggtttctctcacaagacttcaggttcataagaaactctgtagacatcatttacacaagtta |
35602309 |
T |
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| Q |
117 |
catcaactttcatgcaaatcattaatcaaaatcagtttactagctagcatgagtacagaatgtccttctcatcttggatatatttatgatgagtagacca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35602310 |
catcaactttcatgcaaatcattaatcaaaatcagtttactagctagcatgagtacagaatgtccttctcatcttggatatatttatgatgagtagacca |
35602409 |
T |
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| Q |
217 |
aatagtgtgctatttcccatcaaaactatgaatagagtcactccaagactaga-ttttgtattatttatttacaatggggaaatcaatagaaccaaaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35602410 |
aatagtgtgctatttcccatcaaaactatgaatagagtcactccaagactagatttttgtattatttatttacaatggggaaatcaatagaaccaaaata |
35602509 |
T |
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| Q |
316 |
ttaaaaataaaaatcaccacaaaacaattaatctgtg |
352 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35602510 |
ttaaaaataaaaatcaccacaaaacaattaatctgtg |
35602546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 35599454 - 35599496
Alignment:
| Q |
51 |
tttaaggtttctctcacaagacttcaggttcataagaaactct |
93 |
Q |
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| T |
35599454 |
tttaaagtttctctcacaagacttcaggttcacaagaaactct |
35599496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 349
Target Start/End: Original strand, 35600490 - 35600581
Alignment:
| Q |
256 |
actccaagactagattttgtattatttatttacaatggggaaatcaatagaaccaaaatattaaaaata--aaaatcaccacaaaacaattaatct |
349 |
Q |
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|||||||||||| ||||||||||||||| ||| |||||| ||| ||| |||||||||||||| || ||||||||||||||| |||| |||| |
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| T |
35600490 |
actccaagactaaattttgtattatttag----aatagggaaagcaacagagccaaaatattaaaagtaataaaatcaccacaaaataattgatct |
35600581 |
T |
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