View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_4 (Length: 692)
Name: NF17287_high_4
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_4 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 269 - 475
Target Start/End: Original strand, 31032675 - 31032883
Alignment:
| Q |
269 |
gcttaaaataatttaccaaattaagct--catgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataat |
366 |
Q |
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| T |
31032675 |
gcttgaaataatttaccaaattaagctttcatgtcgtcaagcaatttggccaataaacatgaatcttgaactatgccaacatgaattccgaattggaaat |
31032774 |
T |
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| Q |
367 |
tgaaactcaaaaattcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagta-ctctttaatttct |
465 |
Q |
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| T |
31032775 |
tgatactcaaaa-ttcaattcaagcaaagaatgtaatggtcgaaccatgagcaattgacaattaactcaagttaaatattttagtacctctttaatttct |
31032873 |
T |
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| Q |
466 |
taacagttga |
475 |
Q |
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| T |
31032874 |
tgacagttga |
31032883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 269 - 453
Target Start/End: Original strand, 31022783 - 31022971
Alignment:
| Q |
269 |
gcttaaaataatttaccaaattaagctc--atgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataat |
366 |
Q |
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| T |
31022783 |
gcttgaaacaatttaccaaattaagctctcatgtcatcatgcaatttgaccaataaacatgaatcttgaaccatgccaacatgaataccaaattggaaat |
31022882 |
T |
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| Q |
367 |
tgaaactcaaaa--attcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagtac |
453 |
Q |
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| T |
31022883 |
tgatactaaaaaaaattcaattcaagcaaagaatctaatggtcaaaccatgagcaattgacaattaactcaagttaaatatttcagtac |
31022971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 524 - 653
Target Start/End: Original strand, 31032917 - 31033045
Alignment:
| Q |
524 |
aaatgtaaatcagcttttcttcatcagtcgtcgacacgatgattattttgtacacaggagaatctgagttcaatgattcaattggaacatgacaacattc |
623 |
Q |
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| T |
31032917 |
aaatgtaaatcagcttttgctcataagttgttgacacaataatt-tcttgtacaaagtagaatctgagtgcaataattcattatgaacatgagaacattt |
31033015 |
T |
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| Q |
624 |
tttagaagtaatatcaaattgaatatacaa |
653 |
Q |
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| T |
31033016 |
tataaaagtaagatcaatttgaatatacaa |
31033045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 31048735 - 31048786
Alignment:
| Q |
146 |
aataataacatggatgattgatattctagtcatttagccaaatttagtataa |
197 |
Q |
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| T |
31048735 |
aataataatatggatgattgattttctagttatttagccaaatttggtataa |
31048786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 31102806 - 31102891
Alignment:
| Q |
322 |
aacatgaatcttgaac----tatgccaacatgaattccgaattgataattgaaact-caaaaattcaattcaagcaaagaatctaa |
402 |
Q |
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| T |
31102806 |
aacatgaatcttgaactatatatgccaacatgaaatccaaatttatagttgatactcctaaaattcaatacaagcaaacaatctaa |
31102891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 3386 - 3298
Alignment:
| Q |
325 |
atgaatcttgaactatgccaacatgaattccgaattgataattgaaactcaaaaa-ttcaattcaagcaaagaatctaatggtcaaacc |
412 |
Q |
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| T |
3386 |
atgaatcttgaaatatgccaacatgaatttcgaattagaaattgatactaaaaaaattcaattcaagcaaagaatctaatggtcaaacc |
3298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 453
Target Start/End: Complemental strand, 18430318 - 18430148
Alignment:
| Q |
294 |
ctcatgtcacgaagcaatttgaccagtaaacatgaatcttgaactatgccaacatgaattccgaattgataattgaaact--------caaaaattcaat |
385 |
Q |
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| T |
18430318 |
ctcatgtcatcaagcaattttaccaataagcatgaatcttgaaatatgccaacttgaaatccaaattgatagttgatagttgatactcccaaaatttaat |
18430219 |
T |
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| Q |
386 |
tcaagcaaagaatctaa-tggtcaaaccat--gagcaattgacaattaactcaagttaaatatttcagtac |
453 |
Q |
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| T |
18430218 |
tcaaacaatgaatctaattggccaaaccatgagagtaattgacaattaactcaagccaaatgtttcagtac |
18430148 |
T |
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