View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_45 (Length: 305)
Name: NF17287_high_45
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_45 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 290
Target Start/End: Complemental strand, 19733 - 19569
Alignment:
| Q |
123 |
gcagtggaattgagcatgcatcatttgtgacaagctatcaaatccttaaaaaagcatggaatgttatctcatctagttatcaagacatagttacaaatga |
222 |
Q |
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| T |
19733 |
gcagtggaattgagcatgcatcatttgtgacaagctatcaaatccttaaaaaagcatggaatgttatctcatctaattatcaagacatagttacaaat-- |
19636 |
T |
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| Q |
223 |
tgatggtgttggattgtgttggaaagtttacaaagaacaaaatcctgatttgactattatagcctttg |
290 |
Q |
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| T |
19635 |
-gatggtgttggattgtgttggaaagtttacaaagaacaaaatcctgatttgactattatagcctttg |
19569 |
T |
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Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 2159746 - 2159910
Alignment:
| Q |
123 |
gcagtggaattgagcatgcatcatttgtgacaagctatcaaatccttaaaaaagcatggaatgttatctcatctagttatcaagacatagttacaaatga |
222 |
Q |
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| T |
2159746 |
gcagtggaattgagcatgcatcatttgtgacaagctatcaaatccttaaaaaagcatggaatgttatctcatctaattatcaagacatagttacaa---a |
2159842 |
T |
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| Q |
223 |
tgatggtgttggattgtgttggaaagtttacaaagaacaaaatcctgatttgactattatagcctttg |
290 |
Q |
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| T |
2159843 |
tgatggtgttggattgtgttggaaagtttacaaagaacaaaatcctgatttgactattatagcctttg |
2159910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 2174309 - 2174473
Alignment:
| Q |
123 |
gcagtggaattgagcatgcatcatttgtgacaagctatcaaatccttaaaaaagcatggaatgttatctcatctagttatcaagacatagttacaaatga |
222 |
Q |
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| T |
2174309 |
gcagtggaattgagcatgcatcatttgtgacaagctatcaaatccttaaaaaagcatggaatgttatctcatctaattatcaagacatagttacaa---a |
2174405 |
T |
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| Q |
223 |
tgatggtgttggattgtgttggaaagtttacaaagaacaaaatcctgatttgactattatagcctttg |
290 |
Q |
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| T |
2174406 |
tgatggtgttggattgtgttggaaagtttacaaagaacaaaatcctgatttgactattatagcctttg |
2174473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 133 - 290
Target Start/End: Original strand, 2205015 - 2205181
Alignment:
| Q |
133 |
tgagcatgcatcatttgtgacaagctatcaaatccttaaaaaagcatggaatgttatctcatctagttatcaagacatagttacaa---------atgat |
223 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2205015 |
tgagcatgcatcatttgtgacaagctatgaaatccttaaaaaaacatggaatgttatctcatctagttatcaagacatagttacaaatgatgatgatgat |
2205114 |
T |
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| Q |
224 |
gatggtgttggattgtgttggaaagtttacaaagaacaaaatcctgatttgactattatagcctttg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
2205115 |
gatggtgttggattgtgttggaaagtttacaaagaacaaagttctgatttgactattatagcctttg |
2205181 |
T |
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