View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_46 (Length: 297)
Name: NF17287_high_46
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_46 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 30058395 - 30058115
Alignment:
| Q |
1 |
gtgttggaataattaattgtcacaagagattctgttttgtgtgaacactgtaatctgctttaatgtaacaagatatctcttctgcaggcagcagtttgtg |
100 |
Q |
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| T |
30058395 |
gtgttggaataattaattgtcacaagagattctgttttgtgtgaacactgtaatctgctttaatgacacaagatacctcttctgcaggcagcagtttgtg |
30058296 |
T |
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| Q |
101 |
acacttcagtgctcccaaaatgtggaaggacctcacaaggactttattagagaatgacataccacaagacgagacgatacaggtttcaaagaacttggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30058295 |
acacttcagtgctcccaaaatgtggaaggacctcacaaggactttattagagaatgacataccacaagacgagacgatacaggtttcaaagaacttggaa |
30058196 |
T |
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| Q |
201 |
tggaacaccttcataacagaatgacaaaacagatgaagctagtaaaaagaagatatggaggacgtttatgcgtgtgaatct |
281 |
Q |
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| T |
30058195 |
tggaacaccttcataacagaatgacaatacagatgaagctagtaaaaagaagatatggaggacgtttatgcgtgtgaatct |
30058115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 76 - 278
Target Start/End: Complemental strand, 30060986 - 30060785
Alignment:
| Q |
76 |
tctcttctgcaggcagcagtttgtgacacttcagtgctcccaaaatgtggaaggacctcacaaggactttattagagaatgacataccacaagacgagac |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30060986 |
tctcttctgcaggcagcagtttgtgacacttcagtgctcccaaattgtggaaggacctcacaagggctttattagagaatgacataccacaagacgagac |
30060887 |
T |
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| Q |
176 |
gatacaggtttcaaagaacttggaatggaacaccttcataacagaatgacaaa-acagatgaagctagtaaaaagaagatatggaggacgtttatgcgtg |
274 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
30060886 |
gatacaggtttcaaagaactcagaatggaacaccttcataacagaatgacaaatacatatgaagctagtaaaaagaag--atggaggacgtttatgcgtg |
30060789 |
T |
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| Q |
275 |
tgaa |
278 |
Q |
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|||| |
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| T |
30060788 |
tgaa |
30060785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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