View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_48 (Length: 288)
Name: NF17287_high_48
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 32601574 - 32601307
Alignment:
| Q |
15 |
aaggtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcgg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32601574 |
aaggtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtgttctagcttcgg |
32601475 |
T |
|
| Q |
115 |
tgaaattaggttttgacaaatatctaaatgattttgaaggttggctcaggaaatcttacgaagagaggagttcaaaaaatgggaatgatgggtatttgaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32601474 |
tgaaattaggttttgacaaatatctaaatgatttcgaaggttggctcaggaaatcttacgaagagaagagttcaaaaaatgggaatgatgggtatttgaa |
32601375 |
T |
|
| Q |
215 |
ctcattgccaatagatctagnnnnnnngtttcaaaaaattttatgctcaaatctaaaggacaaagatg |
282 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601374 |
ctcattgccaatagatctagaaaaagagtttcaaaaaattttatgctcaaatctaaaggacaaagatg |
32601307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 32583901 - 32583637
Alignment:
| Q |
18 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcggtga |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32583901 |
gtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtgttctagcttcggtga |
32583802 |
T |
|
| Q |
118 |
aattaggttttgacaaatatctaaatgattttgaaggttggctcaggaaatcttacgaagagaggagttcaaaaaatgggaatgatgggtatttgaactc |
217 |
Q |
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|||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
32583801 |
aattagtttttgacaaatatctgaatgatttcgaaggttggctcaggaaatctttcgaagagaagagtttaaaaaatgggaatgatgggtatttgaactc |
32583702 |
T |
|
| Q |
218 |
attgccaatagatctagnnnnnnngtttcaaaaaattttatgctcaaatctaaaggacaaagatg |
282 |
Q |
| |
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||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
32583701 |
attgccaatagatctagaaaaagagtttcaaaaccttttttgctcaaatctaaaggacaaagatg |
32583637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 32633742 - 32633478
Alignment:
| Q |
18 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcggtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
32633742 |
gtgaaggaaaaaggtgggtatgatgcggtatcaagaaaagggttgtggaagtctgtgatagttgaactgggtttggaccttcgtgttctaccttcggtga |
32633643 |
T |
|
| Q |
118 |
aattaggttttgacaaatatctaaatgattttgaaggttggctcaggaaatcttacgaagagaggagttcaaaaaatgggaatgatgggtatttgaactc |
217 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
32633642 |
aattattttttgacaaatatctgaatgatttcgaaggttggctcaggaaatctctcgaagagaatagtttaaaaaatgggaatgatgggtatttgaactc |
32633543 |
T |
|
| Q |
218 |
attgccaatagatctagnnnnnnngtttcaaaaaattttatgctcaaatctaaaggacaaagatg |
282 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
32633542 |
attgccaatagatctagaaaaagagtttcaaaattttttttgctcaaatctaaaggacaaagatg |
32633478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 32659459 - 32659198
Alignment:
| Q |
18 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcggtga |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
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| T |
32659459 |
gtgaaggaaaaaggcgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggaccttcgtattctagcttcagtga |
32659360 |
T |
|
| Q |
118 |
aattaggttttgacaaatatctaaatgattttgaaggttggctcaggaaatcttacgaagagaggagttcaaaaaatgggaatgatgggtatttgaactc |
217 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
32659359 |
aattagtttttgacaaatatctgaatgatttcgaaggttggctcaggaaatctttcgaagagaagagtttaaaaaatgggaatgatggg---ttgaactc |
32659263 |
T |
|
| Q |
218 |
attgccaatagatctagnnnnnnngtttcaaaaaattttatgctcaaatctaaaggacaaagatg |
282 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
32659262 |
attgccaatagatctagaaaaagagtttcaaaaccttttttgctcaaatctgaaggacaaagatg |
32659198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 30252359 - 30252542
Alignment:
| Q |
18 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcggtga |
117 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||||||| ||| |||| | ||||| |||| |
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| T |
30252359 |
gtgaaggaaaaaggagggtatgcggcagtatcgagaaaagggttgtgggactctgtgatagttgatctgggtttggaccttaatgttttggcttcagtga |
30252458 |
T |
|
| Q |
118 |
aattaggttttgacaaatatctaaatgattttgaaggttggctcaggaaatcttacgaagagaggagttcaaaaaatgggaatg |
201 |
Q |
| |
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|||||| || ||| |||||||| | |||||| |||||||||||||| ||| ||| |||||| | ||||| |||||| |||||| |
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| T |
30252459 |
aattagtttatgaaaaatatctgagtgatttcgaaggttggctcagcaaaacttccgaagaaaagagtttcaaaaattggaatg |
30252542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 41176271 - 41176007
Alignment:
| Q |
18 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcggtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| | |||| |||| | || || |||| |
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| T |
41176271 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggctgtgggattctgtgataattgaaatgggttttaaccttcatgttttggcatccgtga |
41176172 |
T |
|
| Q |
118 |
aattaggttttgacaaatatctaaatgattttgaaggttggctcaggaaatcttacgaagagaggagttcaaaaaatgggaatgatgggtatttgaactc |
217 |
Q |
| |
|
|||||| || ||| |||||||| | ||||||||||||||||||||| ||| | | ||||||||||||| ||||||||||||| ||||||||||||| || |
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| T |
41176171 |
aattagtttatgaaaaatatctgagtgattttgaaggttggctcagcaaaacatttgaagagaggagtttaaaaaatgggaatcatgggtatttgaattc |
41176072 |
T |
|
| Q |
218 |
attgccaatagatctagnnnnnnngtttcaaaaaattttatgctcaaatctaaaggacaaagatg |
282 |
Q |
| |
|
|||||| |||||||||| |||| || ||||||||||||||||||||||||| |||| |
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|
| T |
41176071 |
attgccgatagatctagaaaaagaatttcgaagccttttatgctcaaatctaaaggacaacgatg |
41176007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 41149820 - 41149556
Alignment:
| Q |
18 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcggtga |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| || | |||||||||| |
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|
| T |
41149820 |
gtgaaggaaaaaggtgggtatgatgcgatatcgagaaaagggttgtgggattccgtgatagatgaactgggtttggaccttcgtattttggcttcggtga |
41149721 |
T |
|
| Q |
118 |
aattaggttttgacaaatatctaaatgattttgaaggttggctcaggaaatcttacgaagagaggagttcaaaaaatgggaatgatgggtatttgaactc |
217 |
Q |
| |
|
|||||| | ||| |||||||| | |||||| ||||||||||| || ||| ||| ||||||| ||||| ||| |||||| | ||||||||||||| || |
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|
| T |
41149720 |
aattagtatatgaaaaatatctgagtgatttcgaaggttggcttagaaaaacttttgaagagaagagttgcaaagatgggagtcatgggtatttgaattc |
41149621 |
T |
|
| Q |
218 |
attgccaatagatctagnnnnnnngtttcaaaaaattttatgctcaaatctaaaggacaaagatg |
282 |
Q |
| |
|
||| || |||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
41149620 |
atttccgatagatctagaagaagagtttcgaagccttttatgctcaaatctaaaggacaaagatg |
41149556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 3733884 - 3734002
Alignment:
| Q |
18 |
gtgaaggaaaaaggtgggtatgatgcggtatcgagaaaagggttgtggaattctgtgatagttgaactgggtttggagcttcgtgttctagcttcggtga |
117 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||| |||||||||| ||| ||||||| ||||||||||||||| ||||| || | |||| ||||| |
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|
| T |
3733884 |
gtgaaggaaaaaggttggtatgatgcgatatctagaatagggttgtgggatttcgtgatagatgaactgggtttggacattcgtattttggctttggtga |
3733983 |
T |
|
| Q |
118 |
aattaggttttgacaaata |
136 |
Q |
| |
|
|||||| || ||| ||||| |
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|
| T |
3733984 |
aattagtttatgaaaaata |
3734002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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