View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_49 (Length: 287)
Name: NF17287_high_49
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 45467904 - 45467650
Alignment:
| Q |
16 |
atcacctataaattaactccaaccagtgaaaccctgacactccccaagccccacctacacaaaatagacctcctaaatacctattcagcaccaatacttt |
115 |
Q |
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| T |
45467904 |
atcacctataaattaactccaatcagtgaaaccctgacactccccaagccccacctacacaaaatagacctcctaaatacctattcagcaccaatacttt |
45467805 |
T |
|
| Q |
116 |
aaattgaaggtgtgtttggttcaatgtatggcacaacaacaaatgtagttatatttaatcactttcattgtctcatattgttgccggtgccaacatgtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45467804 |
aaattgaaggtgtgtttggttcaatgtatggcacaacaacaaatgtagttatatttaatcactttcattgtctcatattgttgccggtgccaacatgtca |
45467705 |
T |
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| Q |
216 |
gtggtatcagtgtcatgtgacatcagtgtcatttctaatgtctgtgtctatatca |
270 |
Q |
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| T |
45467704 |
gtggtatcagtgtcatgtgacatcaatgtcatttctaatgtctgtgtctatatca |
45467650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 48 - 270
Target Start/End: Original strand, 25734516 - 25734741
Alignment:
| Q |
48 |
cctgacactccccaagccccacctacacaaaatagacctcctaaatacctattcagcaccaatactttaaattgaaggtgtgtttggttcaatgtatggc |
147 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25734516 |
cctgacactccccaagccccaccaacacaaaatagaccccctaaatacctatgcagcaccaatactttaaattgaaggtgtgtttggttcaatgtatggc |
25734615 |
T |
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| Q |
148 |
acaa---caacaaatgtagttatatttaatcactttcattgtctcatattgttgccggtgccaacatgtcagtggtatcagtgtcatgtgacatcagtgt |
244 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
25734616 |
acaacaccaacaaatgtagttatatttaatcactttcattttctcatattattgccggtgccaacatgtcagtggtatcagtgtcatgtggcgtaagtgt |
25734715 |
T |
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| Q |
245 |
catttctaatgtctgtgtctatatca |
270 |
Q |
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|||||||||||| |||||| |||||| |
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| T |
25734716 |
catttctaatgtttgtgtcaatatca |
25734741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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