View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_51 (Length: 283)
Name: NF17287_high_51
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_51 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 56 - 283
Target Start/End: Complemental strand, 2213800 - 2213589
Alignment:
| Q |
56 |
tatatattgacataccacaatacatgtatgaaatcacataaggttcatataattctcatnnnnnnnn-ctcatcctttatataacactgctaaaacacag |
154 |
Q |
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| T |
2213800 |
tatatattgacatatcacaatacatgcatgaaatcacataaggttcatataattctcataaaaaaaaactcatcctttatataacactgctaaaacacag |
2213701 |
T |
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| Q |
155 |
ctattttacagaatcaaaacttgagcaaatccaaatctcatgcttgatgagaattaatgatttgtgtttttcttttgttgttgtagtggtatgcaatata |
254 |
Q |
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| T |
2213700 |
ctattttacacaatcaaaact-----------------catgcttgatgagaattaatgatttgtgtttttcttttgttgttgtagtggtatgcaatata |
2213618 |
T |
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| Q |
255 |
aggtggattatactttgtcaagttgtgtt |
283 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2213617 |
aggtggattatactttgtcaagttgtgtt |
2213589 |
T |
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