View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_high_53 (Length: 272)
Name: NF17287_high_53
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 42334457 - 42334275
Alignment:
| Q |
77 |
ttacatatttaacggaaacgtcgaactaattctactctaatcctcaacagttatataaatctatttcttaactttatggcatgatgtgggacttctttcc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42334457 |
ttacatatttaacggaaacgtcgaactaattctactctaatcctcaatagttatataaatctatttcttaactttatggcatgatgtgggacttctttcc |
42334358 |
T |
|
| Q |
177 |
gttctattgggtctagttggaaccaaatcaaatcgcctcctccatgtaaacgtgctcctgaatgacttttattggtatgaaac |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42334357 |
gttctattgggtctagttggaaccaaatcaaatcgcctcctccatgtaaacgtgctcctgaatgacttttatcggtatgaaac |
42334275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42334525 - 42334482
Alignment:
| Q |
1 |
tcaagcttatgattgatcggtgtattaatcaaaagttcaaacca |
44 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42334525 |
tcaagcatatgattgatcggtgtattaatcaaaagttcaaacca |
42334482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University