View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_high_56 (Length: 263)
Name: NF17287_high_56
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_56 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 36414249 - 36414006
Alignment:
| Q |
1 |
tgctaagtttgtgcttgtgtattagcatagctattatctaatatgtatgttggcttctgctatgattaattttaggatggtacaaatgagcagccaggga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36414249 |
tgctaagtttgtgcttgtgtagcagcatagctattatctaatatgcatgttggcttctgctatgattaattttaggatggtacaaatgagcagccaggga |
36414150 |
T |
|
| Q |
101 |
ttattcctcgtgctcttgaagagctctttcgtcaagcatccatggatggttcatcttcttttactttttcaatgagtatgttggaagtttacatgggcaa |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36414149 |
ttattcctcgtgctctcgaagagctctttcgtcaagcatccatggatggttcatcttcttttactttttcaatgagtatgttggaagtttacatgggcaa |
36414050 |
T |
|
| Q |
201 |
tgtccgggatctgctggctcccagacaatcttgtagaccacacc |
244 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36414049 |
tgtcagggatctgctggctcccagacaatcttgtagaccacacc |
36414006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University