View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_60 (Length: 252)
Name: NF17287_high_60
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 53785596 - 53785363
Alignment:
| Q |
18 |
tgtagtaaacaaacagtaccagtaggatagttctgataatga-ttaaaatactgaagaaataaaaagccatgtaattagagacagacaacattacttgtc |
116 |
Q |
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| T |
53785596 |
tgtagcaaacaaacagtaccagtaggatagttctgataatgaattaaaatacagaagaaataaaaaaccatgtaattagagacagacaacagtacttgtc |
53785497 |
T |
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| Q |
117 |
tctgcttacttgagaaaatttactccacatcaatttggatgaagaataacatgctgccaaagaaaagattagggggttaatattatcaggaaatacatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53785496 |
tctgcttacttgagaaaatttactccacatcaatttggccgaagagtaacatgctgccaaagaaaagattagggggttaatattaccaggaaatacatga |
53785397 |
T |
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| Q |
217 |
aaggaacctcacattaatttatagaaaaacactc |
250 |
Q |
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|||||| |||||||||||||||||||| |||||| |
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| T |
53785396 |
aaggaatctcacattaatttatagaaagacactc |
53785363 |
T |
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