View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17287_high_65 (Length: 248)

Name: NF17287_high_65
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17287_high_65
NF17287_high_65
[»] chr1 (9 HSPs)
chr1 (19-248)||(48265490-48265719)
chr1 (80-248)||(21528300-21528472)
chr1 (88-248)||(36305923-36306083)
chr1 (135-248)||(36929306-36929419)
chr1 (86-162)||(37530791-37530867)
chr1 (86-203)||(32353136-32353253)
chr1 (86-162)||(48073270-48073346)
chr1 (86-203)||(30970447-30970564)
chr1 (114-162)||(25504860-25504908)
[»] chr3 (11 HSPs)
chr3 (63-248)||(49731747-49731933)
chr3 (88-248)||(30167185-30167346)
chr3 (86-203)||(2813339-2813456)
chr3 (86-162)||(6176317-6176393)
chr3 (86-162)||(23601998-23602074)
chr3 (86-162)||(29309633-29309709)
chr3 (93-162)||(25872954-25873023)
chr3 (86-187)||(9379297-9379398)
chr3 (87-162)||(14867625-14867700)
chr3 (88-162)||(54439954-54440028)
chr3 (94-143)||(30435297-30435346)
[»] chr5 (3 HSPs)
chr5 (63-248)||(10486735-10486921)
chr5 (86-162)||(34481172-34481248)
chr5 (88-200)||(587703-587815)
[»] chr4 (12 HSPs)
chr4 (80-248)||(8654906-8655074)
chr4 (82-248)||(47541064-47541230)
chr4 (63-248)||(3129797-3129980)
chr4 (88-248)||(7663080-7663240)
chr4 (86-203)||(2631582-2631699)
chr4 (86-162)||(23873315-23873391)
chr4 (86-162)||(55298845-55298921)
chr4 (86-203)||(8486820-8486937)
chr4 (86-203)||(20675206-20675323)
chr4 (114-162)||(49926133-49926181)
chr4 (114-162)||(19647934-19647982)
chr4 (114-162)||(29553607-29553655)
[»] chr8 (5 HSPs)
chr8 (109-248)||(19384572-19384711)
chr8 (88-248)||(7452491-7452651)
chr8 (86-203)||(16420849-16420966)
chr8 (114-162)||(4987932-4987980)
chr8 (87-205)||(11394188-11394306)
[»] chr7 (9 HSPs)
chr7 (88-248)||(15653546-15653706)
chr7 (136-240)||(46623852-46623956)
chr7 (86-162)||(45943076-45943152)
chr7 (86-201)||(43105497-43105612)
chr7 (86-162)||(13440278-13440354)
chr7 (103-240)||(12378584-12378718)
chr7 (114-183)||(45992780-45992849)
chr7 (87-162)||(19728712-19728787)
chr7 (114-143)||(25924314-25924343)
[»] chr6 (9 HSPs)
chr6 (106-248)||(33630236-33630378)
chr6 (117-248)||(1683179-1683310)
chr6 (86-203)||(15674009-15674126)
chr6 (86-203)||(23347306-23347423)
chr6 (86-162)||(25318079-25318155)
chr6 (86-162)||(26205573-26205649)
chr6 (114-186)||(19255841-19255913)
chr6 (114-186)||(33640119-33640191)
chr6 (114-162)||(503399-503447)
[»] scaffold0418 (1 HSPs)
scaffold0418 (88-248)||(7814-7974)
[»] chr2 (11 HSPs)
chr2 (88-248)||(45421658-45421818)
chr2 (86-203)||(43627683-43627800)
chr2 (86-162)||(33548097-33548173)
chr2 (86-157)||(26894451-26894522)
chr2 (86-157)||(26899890-26899961)
chr2 (86-224)||(31085476-31085614)
chr2 (103-162)||(22052852-22052911)
chr2 (86-162)||(13550349-13550425)
chr2 (103-161)||(36804138-36804196)
chr2 (114-143)||(12525185-12525214)
chr2 (103-143)||(21517684-21517724)
[»] scaffold0029 (1 HSPs)
scaffold0029 (80-167)||(134687-134774)
[»] scaffold0002 (2 HSPs)
scaffold0002 (80-167)||(312514-312601)
scaffold0002 (80-167)||(327968-328055)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 48265490 - 48265719
Alignment:
Q  19 tgacaagctagaaaccatgtgagtttagttttttaacatgttttttgatccggagcagcgaggg-ttatgtggagttggagacgtaggttgtggcagtgg 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||| |||||||||| ||||||||||||||||||||||||    
T  48265490 tgacaagctagaaaccatgtgagtttagttttt-aacatgttttttgatctggagcggcggggggttatgtggaggtggagacgtaggttgtggcagtgg 48265588  T
Q  118 gaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagatagatgagtttggcttcctgctccgtcagatg 217  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  48265589 gaggaggagttgttagcggagtgtagggctttacttcttgatgttctcttgtttccgaatgtttcagatatatgagtttggcttcctgctccgtcagatg 48265688  T
Q  218 gatacactgttagtggtgcttatcatgtgct 248  Q
    |||||||||||||||||||||||||||||||    
T  48265689 gatacactgttagtggtgcttatcatgtgct 48265719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 21528472 - 21528300
Alignment:
Q  80 gggttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttag---tggagt-gtagagctttacttcttgatgttctcttgtttttga 175  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||  ||||||   |||||  |||| |||||||||||||||||||||||||||  ||    
T  21528472 gggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttgatgttctcttgtttccga 21528373  T
Q  176 atgtttcagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21528372 atgtttcagatagacgggtttggcttcctgctccgtcagatggatacaccgttagtggtgcttatcatgtgct 21528300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 36306083 - 36305923
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagata 187  Q
    ||||| ||||| ||||| |||||||||||| |||||||| |||||| ||||||||| ||||||||||||||| |||| ||||||  ||||||||||||||    
T  36306083 tggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggctttacttcttgatattctattgtttccgaatgtttcagata 36305984  T
Q  188 gatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
     ||| ||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  36305983 tatgggtttgtcttcctgctccttcagatggatacactattcgtggtgcttatcatgtgct 36305923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 36929419 - 36929306
Alignment:
Q  135 ggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggt 234  Q
    ||||||||| |||||||||||||||||||||||||||   ||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||| |||||    
T  36929419 ggagtgtagggctttacttcttgatgttctcttgtttccaaatgtttcagatatatgggtttgacttcctgctccttcagatggatacactgttcgtggt 36929320  T
Q  235 gcttatcatgtgct 248  Q
    ||||||||||||||    
T  36929319 gcttatcatgtgct 36929306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 37530867 - 37530791
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||| |||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||    
T  37530867 tgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttgatgtt 37530791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 32353136 - 32353253
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||| |||  |||||||| ||||||||||||||||||  ||||  |   |||||||||||    
T  32353136 tgtggaggtggagacgtaggttatggcagtggaaggaggagttgctagatgagtgtagggctttacttcttgatgtttccttgaatcctaatgtttcaga 32353235  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  32353236 tagctgggtgtggcttcc 32353253  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 48073270 - 48073346
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||| |||  |||||| | ||||||||||||||||||    
T  48073270 tgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttcttgatgtt 48073346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 30970447 - 30970564
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| ||||| ||||| ||||||  ||||||||||||| || | | ||||||||| || |||||||||||||||   |||| |   |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttgatgtttctttgtctcctaatgtttcaga 30970546  T
Q  186 tagatgagtttggcttcc 203  Q
    || ||| || ||||||||    
T  30970547 taaatgggtgtggcttcc 30970564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 25504860 - 25504908
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||||| |||||||||||||||| ||||| || |||||||||    
T  25504860 gtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgtt 25504908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 49731747 - 49731933
Alignment:
Q  63 ttgatccggagcagcgaggg-ttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgt 161  Q
    |||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  49731747 ttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttgatgt 49731846  T
Q  162 tctcttgtttttgaatgtttcagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49731847 tctcttgtttctgaatgtttcagatagatgggtttggcttcctgctccgtcagatggatacactgttagtggttcttatcatgtgct 49731933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 30167185 - 30167346
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgttt-ttgaatgtttcagat 186  Q
    ||||| ||||| ||||| ||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||| ||||||   |||||||||||||    
T  30167185 tggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtaggactttacttcttgatgttcttttgtttgccgaatgtttcagat 30167284  T
Q  187 agatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    |  || ||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||    
T  30167285 acttgggtttggcttcctgctcctttagatggatacattgttcgtggtgcttatcaggtgct 30167346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 2813339 - 2813456
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||  ||||  |   |||||||||||    
T  2813339 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtttccttgaatcctaatgtttcaga 2813438  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  2813439 tagctgggtgtggcttcc 2813456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 6176317 - 6176393
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||| | ||||||||||||||||||| |||  |||||||| ||||||||||||||||||    
T  6176317 tgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtt 6176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 23602074 - 23601998
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtt 23601998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 29309709 - 29309633
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| || |||||||||||||||    
T  29309709 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttgatgtt 29309633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 25872954 - 25873023
Alignment:
Q  93 ttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||||||| |||||||||||||||| |||| ||| ||||||||| ||||||||| ||||||||    
T  25872954 ttggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttgatgtt 25873023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 9379398 - 9379297
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| ||||| || ||||| |||||||||||||||| | |||||| ||||||||| || ||||| |||||||||  ||||| |   |||||||||||    
T  9379398 tgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcggagtgtagggcattactacttgatgtttccttgtatcccaatgtttcaga 9379299  T
Q  186 ta 187  Q
    ||    
T  9379298 ta 9379297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 14867625 - 14867700
Alignment:
Q  87 gtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||||||| |||||||||  |||||||||||  || |||| ||||||||| || ||| | |||||||||    
T  14867625 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggccttaatacttgatgtt 14867700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 54439954 - 54440028
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||| |||||  |||||  |||||| || ||||| |||| ||||||||| |||||||| |||||||||    
T  54439954 tggagttggaggcgtagactgtgggcgtgggaagaagagttattagaggagtgtagggctttactgcttgatgtt 54440028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 30435346 - 30435297
Alignment:
Q  94 tggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtag 143  Q
    ||||| || ||||||||| |||||||||||||| |||||| |||||||||    
T  30435346 tggaggcggaggttgtgggagtgggaggaggagctgttaggggagtgtag 30435297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 10486735 - 10486921
Alignment:
Q  63 ttgatccggagcagcgaggg-ttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgt 161  Q
    ||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||    
T  10486735 ttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgtagggctttacttcttgatgt 10486834  T
Q  162 tctcttgtttttgaatgtttcagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10486835 tctcttgtttccgaatgtttcagatagatgggtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 10486921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 34481248 - 34481172
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||| |||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||    
T  34481248 tgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttgatgtt 34481172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 587815 - 587703
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagata 187  Q
    ||||| ||||| |||||| | |||  ||||||||||||  |||||| ||||||||| ||||||||||||||||||   |||| |   |||||||||||||    
T  587815 tggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtagggctttacttcttgatgtttctttgtatcctaatgtttcagata 587716  T
Q  188 gatgagtttggct 200  Q
    ||||||| |||||    
T  587715 gatgagtgtggct 587703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 8654906 - 8655074
Alignment:
Q  80 gggttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgt 179  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||  ||||||    
T  8654906 gggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgttctcttgtttccgaatgt 8655005  T
Q  180 ttcagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8655006 ttcagatagatgggtttggcttcctgctccgtcagagggatacactgttagtggtgcttatcatgtgct 8655074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 82 - 248
Target Start/End: Complemental strand, 47541230 - 47541064
Alignment:
Q  82 gttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgttt 181  Q
    ||||||||||| ||||||||| | |||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||| ||||||  ||||||||    
T  47541230 gttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttgatgttcttttgtttccgaatgttt 47541131  T
Q  182 cagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47541130 cagatagataggtttggtttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 47541064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 3129797 - 3129980
Alignment:
Q  63 ttgatccggagcagcgaggg-ttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgt 161  Q
    ||||| ||||||||| |||| ||| |||||| ||||||||| | ||||||||||||||||||    |||||| ||||||||| |||||||||||||||||    
T  3129797 ttgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggaga---tgttagcggagtgtagggctttacttcttgatgt 3129893  T
Q  162 tctcttgtttttgaatgtttcagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    ||||||| ||  |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3129894 tctcttgcttccgaatgtttcagatagatgggtttggcttcctgctccgtcagatggatacattgttagtggtgcttatcatgtgct 3129980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 7663080 - 7663240
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagata 187  Q
    ||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||  ||||||||||||||    
T  7663080 tggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgttcttttgtttccgaatgtttcagata 7663179  T
Q  188 gatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
     ||| ||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||    
T  7663180 catgggtttggcttcctgctcctttagatggatacactgttcgtggtgcttatcaggtgct 7663240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 2631699 - 2631582
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||  ||||  |   |||||||||||    
T  2631699 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtttccttgaatcctaatgtttcaga 2631600  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  2631599 tagctgggtgtggcttcc 2631582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 23873315 - 23873391
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||    
T  23873315 tgtggaggtggagacgtaggtaatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtt 23873391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 55298921 - 55298845
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||    
T  55298921 tgtggaggtggagacgtagtttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtt 55298845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 8486820 - 8486937
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| |||||||||||| |||||||| |||   ||||||| ||||||||||||||||||  ||||  |   |||||||||||    
T  8486820 tgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttgatgtttccttgaatcctaatgtttcaga 8486919  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  8486920 tagctgggtgtggcttcc 8486937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 20675323 - 20675206
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| | |  ||||||||  |||||||||||||||||  ||||  |   |||||||||||    
T  20675323 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttcttgatgtttccttgaatcctaatgtttcaga 20675224  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  20675223 tagctgggtgtggcttcc 20675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 49926133 - 49926181
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||||    
T  49926133 gtgggaggaggagttgttagtggagtgtagggcttttctgcttgatgtt 49926181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 19647982 - 19647934
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||||| |||||||||||||||| ||||| || |||||||||    
T  19647982 gtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgtt 19647934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 29553607 - 29553655
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    |||||||||||||||||||| |||||||||  |||||||  ||||||||    
T  29553607 gtgggaggaggagttgttagaggagtgtaggactttactgtttgatgtt 29553655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 19384572 - 19384711
Alignment:
Q  109 tggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagatagatgagtttggcttcctgctc 208  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttgatgttctcttgtttccgagtgtttcagatagatgggtttggcttcctgctc 19384671  T
Q  209 cgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19384672 cgtcagatggatacactgttagtggtgcttatcatgtgct 19384711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 7452651 - 7452491
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagata 187  Q
    ||||| ||||| ||||| ||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  7452651 tggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgtagggctttacttcttgatgttctcttgtttccgaatgtttcagata 7452552  T
Q  188 gatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  7452551 gatgggtttggcttcctgctccttcagatggatacactgttcgtggtgcttatcatgtgct 7452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 16420849 - 16420966
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  ||| |||| ||||||||||| ||||||  ||||  |   |||||||||||    
T  16420849 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttctcgatgtttccttgaatcctaatgtttcaga 16420948  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  16420949 tagctgggtgtggcttcc 16420966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 4987932 - 4987980
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||||| |||||||||||||||| ||||| || |||||||||    
T  4987932 gtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgtt 4987980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 11394188 - 11394306
Alignment:
Q  87 gtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagat 186  Q
    |||||||||||| || |||||||||  |||||||||||  || |||| ||||||||| || ||||| ||||| ||| | ||||||   ||| ||||||||    
T  11394188 gtggagttggaggcggaggttgtgggcgtgggaggaggttttattagaggagtgtagggccttactgcttgaagtttttttgtttcctaatatttcagat 11394287  T
Q  187 agatgagtttggcttcctg 205  Q
       || |||||||||||||    
T  11394288 tcttgggtttggcttcctg 11394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 15653546 - 15653706
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagata 187  Q
    ||||| ||||| ||||| ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  15653546 tggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagggctttacttcttgatgttctcttgtttccgaatgtttcagata 15653645  T
Q  188 gatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    |||| |||||||||||||||||   |||||||||||||||| ||||||| |||||||||||    
T  15653646 gatgggtttggcttcctgctcctctagatggatacactgttcgtggtgcctatcatgtgct 15653706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 46623956 - 46623852
Alignment:
Q  136 gagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagatagatgagtttggcttcctgctccgtcagatggatacactgttagtggtg 235  Q
    |||||||| |||||||||||||||||| |||||| |  |||||||||||||| ||| ||||||||||||||||| | |||||||||||||||| ||||||    
T  46623956 gagtgtagggctttacttcttgatgttatcttgtctccgaatgtttcagatacatgggtttggcttcctgctcctttagatggatacactgtttgtggtg 46623857  T
Q  236 cttat 240  Q
    |||||    
T  46623856 cttat 46623852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 45943152 - 45943076
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||| |||| || ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgtt 45943076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 43105612 - 43105497
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| ||||| || ||||||||||| |||||||||||| ||||||  |||||||| || |||||  || |||||  |||||||  ||||||||||||    
T  43105612 tgtggaggtggaggcgcaggttgtggcaatgggaggaggagatgttagcagagtgtagggcgttactctttaatgtttccttgtttccgaatgtttcaga 43105513  T
Q  186 tagatgagtttggctt 201  Q
    |||||| |||||||||    
T  43105512 tagatgggtttggctt 43105497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 13440354 - 13440278
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| ||||||||||| || ||| ||||||||||||||||| |||  |||||| | ||||||||||||||||||    
T  13440354 tgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttcttgatgtt 13440278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 12378584 - 12378718
Alignment:
Q  103 aggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagatagatgagtttggcttc 202  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||   |||||||||||||  | ||| |   ||||||| |||||| || |||||||| |    
T  12378584 aggttgtggcagtgggaggaggagatgttagcggagtgtagggc---acttcttgatgtttccctgtatcctaatgttttagatagctgggtttggctcc 12378680  T
Q  203 ctgctccgtcagatggatacactgttagtggtgcttat 240  Q
    | | |||||||  ||| ||||| ||| |||||||||||    
T  12378681 cggatccgtcatgtggctacacagttcgtggtgcttat 12378718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 45992849 - 45992780
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttca 183  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||||||| | ||| || | |||||||||    
T  45992849 gtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgtttttttgcttgttaatgtttca 45992780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 19728787 - 19728712
Alignment:
Q  87 gtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||||||| |||||||||  |||||||||||  || |||| ||||||||| |  ||||| |||||||||    
T  19728787 gtggagttggagacggaggttgtgggcgtgggaggaggttttattagaggagtgtagggtcttactacttgatgtt 19728712  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 25924343 - 25924314
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtag 143  Q
    ||||||||||||||||||||||||||||||    
T  25924343 gtgggaggaggagttgttagtggagtgtag 25924314  T

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Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 33630378 - 33630236
Alignment:
Q  106 ttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagatagatgagtttggcttcctg 205  Q
    ||||||||||||||||||||| |||||| ||||||||| |||||| || |||||||||||||||||  |||||||||||||||||| ||||| |||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggctttattttttgatgttctcttgtttccgaatgtttcagatagatgggtttgacttcctg 33630279  T
Q  206 ctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  33630278 ctccgtcagatggatacactgttagtggtgcttataatgtgct 33630236  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 1683310 - 1683179
Alignment:
Q  117 ggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagatagatgagtttggcttcctgctccgtcagat 216  Q
    ||||| |||| |||||| ||||||||| |||||||||||||||||||| || |||  |||||||||||||||||  |||||||||||| |||||||| ||    
T  1683310 ggaggtggagatgttagcggagtgtagggctttacttcttgatgttctattatttccgaatgtttcagatagattggtttggcttcctactccgtcaaat 1683211  T
Q  217 ggatacactgttagtggtgcttatcatgtgct 248  Q
    ||||||||| ||||||||||||||||||||||    
T  1683210 ggatacactattagtggtgcttatcatgtgct 1683179  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 15674126 - 15674009
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||  ||||| || ||||||||||||||||||  ||||  |   |||||||||||    
T  15674126 tgtggaggtggagacgtaggttgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttgatgtttccttgaatcctaatgtttcaga 15674027  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  15674026 tagctgggtgtggcttcc 15674009  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 23347306 - 23347423
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||  ||||  |   |||||||||||    
T  23347306 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtttccttgaatcctaatgtttcaga 23347405  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  23347406 tagctgggtgtggcttcc 23347423  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 25318155 - 25318079
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  25318155 tgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgtt 25318079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 26205649 - 26205573
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  26205649 tgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgtt 26205573  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 19255913 - 19255841
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagat 186  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||||||| | ||| || | ||||||||||||    
T  19255913 gtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgtttttttgcttgttaatgtttcagat 19255841  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 33640191 - 33640119
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagat 186  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||||||| | ||| || | ||||||||||||    
T  33640191 gtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgtttttttgcttgttaatgtttcagat 33640119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 503399 - 503447
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||||||||| |||||||||||||||| ||||| || |||||||||    
T  503399 gtgggaggaggagatgttagtggagtgtagggcttttctgcttgatgtt 503447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 7974 - 7814
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagata 187  Q
    ||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||  ||||||||||||||    
T  7974 tggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttgatgttcttttgtttccgaatgtttcagata 7875  T
Q  188 gatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
     ||| ||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||    
T  7874 catgggtttggcttcctgctcctttagatggatacactgttcgtggtgcttatcaggtgct 7814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 45421818 - 45421658
Alignment:
Q  88 tggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcagata 187  Q
    ||||| ||||| ||||| |||| |||||||||||||||| |||||| ||||||||| ||||| |||||||||||||| ||||||  ||||||||||||||    
T  45421818 tggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtagggcttttcttcttgatgttcttttgtttccgaatgtttcagata 45421719  T
Q  188 gatgagtttggcttcctgctccgtcagatggatacactgttagtggtgcttatcatgtgct 248  Q
     ||| |||||||||  |||||| | |||||||||||||||| ||||||||||||| |||||    
T  45421718 catgggtttggctttatgctcctttagatggatacactgttcgtggtgcttatcaggtgct 45421658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 43627800 - 43627683
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||  ||||  |   |||||||||||    
T  43627800 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtttccttgaatcctaatgtttcaga 43627701  T
Q  186 tagatgagtttggcttcc 203  Q
    ||| || || ||||||||    
T  43627700 tagctgggtgtggcttcc 43627683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 33548173 - 33548097
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| ||||||||||||||||||    
T  33548173 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttgatgtt 33548097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 26894451 - 26894522
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttg 157  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| |||||||||||||    
T  26894451 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 26899890 - 26899961
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttg 157  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||  |||||||| |||||||||||||    
T  26899890 tgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 31085476 - 31085614
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctcttgtttttgaatgtttcaga 185  Q
    ||||||| |||||| | |||||||| ||||||||||||||| ||||||  |||||||| ||||||||||||||||||  ||||  |   |||||||||||    
T  31085476 tgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttgatgtttccttgaatcctaatgtttcaga 31085575  T
Q  186 tagatgagtttggcttcctgctccgtcagatggatacac 224  Q
    ||| || || ||||||||   |||||||| ||| |||||    
T  31085576 tagctgggtgtggcttccaaatccgtcaggtggctacac 31085614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 22052911 - 22052852
Alignment:
Q  103 aggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttgatgtt 22052852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 13550425 - 13550349
Alignment:
Q  86 tgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgtt 162  Q
    ||||||| |||||||||||||| ||||||||||| ||||| ||| ||| |||||| || |||||| |||||||||||    
T  13550425 tgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggctttaattcttgatgtt 13550349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 36804196 - 36804138
Alignment:
Q  103 aggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgt 161  Q
    |||||||||  |||||||||||| ||||||| ||||||||| ||||||||  |||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttactatttgatgt 36804138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 12525214 - 12525185
Alignment:
Q  114 gtgggaggaggagttgttagtggagtgtag 143  Q
    ||||||||||||||||||||||||||||||    
T  12525214 gtgggaggaggagttgttagtggagtgtag 12525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 21517684 - 21517724
Alignment:
Q  103 aggttgtggcagtgggaggaggagttgttagtggagtgtag 143  Q
    |||||||||  ||||||||||||||||||||| ||||||||    
T  21517684 aggttgtgggcgtgggaggaggagttgttagtagagtgtag 21517724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 134687 - 134774
Alignment:
Q  80 gggttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctctt 167  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  134687 gggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgttctctt 134774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 312514 - 312601
Alignment:
Q  80 gggttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctctt 167  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  312514 gggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgttctctt 312601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 327968 - 328055
Alignment:
Q  80 gggttatgtggagttggagacgtaggttgtggcagtgggaggaggagttgttagtggagtgtagagctttacttcttgatgttctctt 167  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  327968 gggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttgatgttctctt 328055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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