View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_high_7 (Length: 552)
Name: NF17287_high_7
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 47539023 - 47539550
Alignment:
| Q |
1 |
tctctttctcatccatgaagattcttatgttccttaatgattccttcaactcttgctttgttatgaatccatcaccattcttgtcgaaagtcgaaaacac |
100 |
Q |
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| T |
47539023 |
tctctttctcatccatgaagattcttatgttccttaatgattccttcaactcttgctttgttatgaatccatcaccattcttgtcgaaagtcgaaaacac |
47539122 |
T |
|
| Q |
101 |
ttttttgagttcttccttcccataattagcatccttttccaacttggtcgttgtaaccaagttggttttactaacattactattgttagtgggaaaaatg |
200 |
Q |
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| T |
47539123 |
ttttttgagttcttccttcccataattagcatccttttccaacttggtcgttgtaaccaagttggttttactaacattactattgttagtgggaaaaatg |
47539222 |
T |
|
| Q |
201 |
atttgaagaaaagcacgaattttgttggtaggtatgtaaaagattatatttatgaggccagcaatgaaaagaaccgctagcaaaagtgtagcaagaacca |
300 |
Q |
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| T |
47539223 |
atttgaagaaaagcacgaattttgttggtaggtatgtaaaagattatatttatgaggccagcaatgaaaagaaccgctagcaaaagtgtagcaagaacca |
47539322 |
T |
|
| Q |
301 |
tgttttggccaaaaatattaatattacaaacaagagatgaaggataaggaagaagaggatgaggaaggtagcaaggaactagatagatattagaataaca |
400 |
Q |
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| T |
47539323 |
tgttttggccaaaaatattaatattacaaacaagagatgaaggataaggaagaagaggatgaggaaggtagcaaggaactagatagatattagaataaca |
47539422 |
T |
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| Q |
401 |
taaggagataatgaagagtatacaaaactttgtatgctttttagttttcttggttgatgnnnnnnnaatttgataataataaagttcctatagtaaaaaa |
500 |
Q |
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| T |
47539423 |
taaggagataatgaagagtatacaaaactttgtatgctttttagttttcttggttgatgtttttttaatttgataataataaagttcctatagtaaaaaa |
47539522 |
T |
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| Q |
501 |
gaagtttatgcaggtttggtggtggtgc |
528 |
Q |
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| T |
47539523 |
gaagtttatgcaggtttggtggtggtgc |
47539550 |
T |
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