View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17287_high_9 (Length: 546)
Name: NF17287_high_9
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 16 - 525
Target Start/End: Original strand, 42946026 - 42946536
Alignment:
| Q |
16 |
gaaggtaaggcttagtgtgttttgtggtttttagaagtttcataggcaacagggacatagatattagtattatgttaggaaatgaaagcaggacaactac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42946026 |
gaaggtaaggcttagtgtgttttgtggtttttagaagtttcataggcaacagggacatagatattagtattatgttaggaaatgaaagcaggacaactac |
42946125 |
T |
|
| Q |
116 |
tttgttgtctccttccatctattattgaagtgagacattgatagtatgtgacatgaagatggttgttgatttta-gaatcaggttagggaagaaattatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
42946126 |
tttgttgtctccttccatctattattgaagtgagacattgatagtatgtgacatgaagatggttgttgattttaagaatcaggttagggaagaaattacg |
42946225 |
T |
|
| Q |
215 |
gcacctgatcccacctaatcaaaattagcttaattaaattaatcagcacttattctcagtaccaaatcctttccccactcctgcactcaaccataaatgt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42946226 |
gcacctgatcccacctaatcaaaattagcataattaaattaagcagcacttattctcagtaccaaatcctttccccactcctgcactcaaccataaatgt |
42946325 |
T |
|
| Q |
315 |
aaagttgaaaaaagtaatccgttcccttcattttatttttattctcatctaacgttcattgttagtttatatgattaagaattaagataccccgtataaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42946326 |
aaagttgaaaaaagtaatccgttcccttcattttatttttattctcatccaactttcattgttagtttatatgattaagaattaagataccccgtataaa |
42946425 |
T |
|
| Q |
415 |
cacaacaattctatttatagccaaagcattatattagtgcattattaatccnnnnnnncttaaaattctaaatttactttggctagttatttgtatttat |
514 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42946426 |
cacaataattctatttatagccaaagcattatattagtgcattattaaaccaaaaaaacttaaaattctaaagttactttggctagttatttgtatttat |
42946525 |
T |
|
| Q |
515 |
atacagtgttt |
525 |
Q |
| |
|
||||||||||| |
|
|
| T |
42946526 |
atacagtgttt |
42946536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University