View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17287_low_10 (Length: 551)
Name: NF17287_low_10
Description: NF17287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17287_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Complemental strand, 8088471 - 8087942
Alignment:
| Q |
17 |
aactcgaataaaagattaaagaagcaactaattgactttaactatacagtttgcagtagatataaactgcagatgcagggtaatcattagtccgctgcaa |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8088471 |
aactcgaataaaagattaaagaagcaactgattgactttaactatacagtttgcagtagatataaactgcagatgcagggtaatcattagtccgctgcaa |
8088372 |
T |
|
| Q |
117 |
cttcnnnnnnncacgaggtattgtccgctttgggtaaagcatctagcgtaaactctcatggctttgtcctttgttaaaaggcgtctcataggtggttata |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8088371 |
cttctttttttcacgaggtattgtccgctttgggtaaagcatctagcgtaaactctcatggctttgtcctttgttaaaaggcgtctcgtaggtggttata |
8088272 |
T |
|
| Q |
217 |
aaccatccttagcctaaattatgaagctatgtgtcactttttggtgtaatggaagagttgtcactagtcaaggctaaggaactaaagggtttgttagctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8088271 |
aaccatccttagcctaaattatgaagctatgtgtcactttttggtgtaatggaagagttgtcactagtcaaggctaaggaactaaagggtttgttagctc |
8088172 |
T |
|
| Q |
317 |
tcgtatgtgacttggaccctccttctcagacagagccgacattcggacctcaagtcagctgcaccgcatttctgaagtattattcattttgaatcttgtg |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8088171 |
tcgtatgtggcttggaccctccttctcagacagagccgacattcggacctcaagtcagctgcaccgcatttctgaagtattattcattttgaatcttgtg |
8088072 |
T |
|
| Q |
417 |
tgagccctcgtagatttgtacttaattgaaagacacttcagtgggttgaggagagtacgtgtttgttaatcgtccttagtttcgattttcaaatat--ta |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
8088071 |
tgagccctcgtagatttgtacttaattgaaagacacttcagtgagttgaggagagtacgtgtttgttaatcgtccttagtttcgattctcaaatattgta |
8087972 |
T |
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| Q |
515 |
agactttttggtgtatcagaatagaattat |
544 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
8087971 |
agactttttggtgtatcagaatagagttat |
8087942 |
T |
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